Phylogeography of the freshwater catfish Hemibagrus guttatus (Siluriformes, Bagridae): Implications for South China biogeography and influence of sea-level changes

Yang, Lei; He, Shunping

doi:10.1016/j.ympev.2008.05.032

Cited by 30 publications

(29 citation statements)

References 21 publications

(24 reference statements)

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“…Although the literature on this subject is relatively limited, it seems clear that high tectonic activity and sea level changes during the Pleistocene have created a complex phylogeographic pattern with little concordance among species [64]. Nevertheless, studies on other freshwater fish, such as Hemibarbus lameo [65] and Salanx ariakensis [66], found evidence that secondary contact between diverged populations from different major river systems took place during low sea levels at the end of the Pleistocene.…”

Section: Discussionmentioning

confidence: 99%

Invasive Cyprinid Fish in Europe Originate from the Single Introduction of an Admixed Source Population Followed by a Complex Pattern of Spread

et al. 2011

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The Asian cyprinid fish, the topmouth gudgeon (Pseudorasbora parva), was introduced into Europe in the 1960s. A highly invasive freshwater fish, it is currently found in at least 32 countries outside its native range. Here we analyse a 700 base pair fragment of the mitochondrial cytochrome b gene to examine different models of colonisation and spread within the invasive range, and to investigate the factors that may have contributed to their invasion success. Haplotype and nucleotide diversity of the introduced populations from continental Europe was higher than that of the native populations, although two recently introduced populations from the British Isles showed low levels of variability. Based on coalescent theory, all introduced and some native populations showed a relative excess of nucleotide diversity compared to haplotype diversity. This suggests that these populations are not in mutation-drift equilibrium, but rather that the relative inflated level of nucleotide diversity is consistent with recent admixture. This study elucidates the colonisation patterns of P. parva in Europe and provides an evolutionary framework of their invasion. It supports the hypothesis that their European colonisation was initiated by their introduction to a single location or small geographic area with subsequent complex pattern of spread including both long distance and stepping-stone dispersal. Furthermore, it was preceded by, or associated with, the admixture of genetically diverse source populations that may have augmented its invasive-potential.

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Section: Discussionmentioning

confidence: 99%

Invasive Cyprinid Fish in Europe Originate from the Single Introduction of an Admixed Source Population Followed by a Complex Pattern of Spread

et al. 2011

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“…See Table 1 for site names. The black dashed line indicates the coastal areas and sea basins that were exposed during the early Pleistocene, following Ota (1998) and Yang and He (2008) intermixed. The south-eastern coastal districts are located south of the Yangtze River, north of the Pearl River, and east of the Wuyi Mountains.…”

Section: Island In 2007mentioning

confidence: 99%

“…See Table for site names. The black dashed line indicates the coastal areas and sea basins that were exposed during the early Pleistocene, following Ota () and Yang and He ()…”

Section: Introductionmentioning

confidence: 99%

Genetic diversity and population history ofTanichthys albonubes(Teleostei: Cyprinidae): Implications for conservation

Zhao

Hsu

Luo

et al. 2017

Aquatic Conservation

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Tanichthys albonubes is a cyprinid fish of South China and North Vietnam. Although this species has been sold worldwide in the aquarium trade for more than a century, it is listed as a second‐class state‐protected animal in China and classified as ‘extinct in nature’ in the China Red Data Book. To investigate the population history of T. albonubes and evaluate the genetic conditions among the wild and hatchery populations, mitochondrial genes (mtDNA, 2032 bp from the d‐loop and cyt b), nuclear genes (nuDNA, 2241 bp from RAG1 and ENC1) and 13 microsatellite loci were used to assess the genetic structure throughout the range of this species. In total, 358 specimens were collected from three hatcheries and all known wild populations. This study found that the discordant population structure among these genetic markers was accounted for by differences in the effective population sizes. The results indicated that (1) the three hatchery stocks originated from a single source in China and that the hatchery stock in China maintained almost all the T. albonubes genetic diversity in the downstream reaches of the Pearl River; (2) the wild population near Baiyun Mountain originated from hatchery releases; (3) the population history reflects the complex geological history of South China; and (4) the habitat destruction and fragmentation that have resulted in small and isolated populations may have shaped the genetic structure of T. albonubes. The low‐level genetic diversity of T. albonubes supports the need for conservation interventions. The geographically distinct genotypes indicate a need for the development of management strategies directed towards the conservation of localized populations. The genetic status of all populations, including the hatchery stocks, should be evaluated and monitored continuously.

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“…Populations of freshwater fishes (Chen & He, 2000), frogs (Emerson & Berrigan, 1993), salamanders (Hayashi & Matsui, 1988) and non-avian reptiles (Ota, 1998) in Taiwan and the Ryukyus share close historical relationships with eastern China, probably reflecting the occurrence of ephemeral land bridges that connected these areas. Further, genogeographical studies of Chinese freshwater fishes, including Hemibagrus guttatus (Yang & He, 2008) and Neosalanx taihuensis (Zhao et al, 2008), suggest that the trajectories of the major Chinese rivers have changed. Regardless, little is known about the effect of East Asian palaeoenvironmental oscillations on the genetic structure, possible refugia and the contraction and expansion routes of aquatic species.…”

Section: Introductionmentioning

confidence: 99%

Quaternary palaeoenvironmental oscillations drove the evolution of the Eurasian Carassius auratus complex (Cypriniformes, Cyprinidae)

Gao

Wang

Luo

et al. 2012

Journal of Biogeography

102

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Aim We sought to reconstruct the spatio‐temporal genetic diversification in goldfish of the Carassius auratus complex, which is widely distributed in Eurasia, to test whether vicariance events or human‐mediated translocations best explained lineage divergence and genogeographical history. Location East Asia and the Oriental islands including Japan, the Ryukyus and Taiwan, and Europe, including Russia and the Czech Republic. Methods We reconstructed the matrilineal history of Eurasian goldfish using 1876 sequences from the partial mitochondrial DNA control region (426 bp) and 191 complete sequences of cytochrome b (1140 bp) from 67 localities representing most of the range of the species. Divergence times were estimated using a Bayesian Markov chain Monte Carlo approach based either on molecular clock data or on the fossil record. Genetic structure and the historical demography of populations were analysed using partial correlation tests and analyses of molecular variance. Results Three lineages had high levels of regional specificity. Lineages A and B from the main islands of Japan differed greatly from lineage C, which occurred on the mainland, Taiwan and the Ryukyus. Lineages A and B had late Pliocene origins. Six geographically constrained sublineages within lineage C had near‐simultaneous mid‐Pleistocene divergences. Main conclusions Genetic structure in the C. auratus complex appears to have been driven by palaeoenvironmental perturbations rather than human translocations. The disappearance of a land bridge in the Tsushima Strait around 3.0 Ma is responsible for the separation of Japanese and continental lineages; the estimated divergence time is 2.75–2.32 Ma. Fujian, China and Vietnam appear to have provided important refugia for the C. auratus complex during glaciation. After warm, moist summer monsoons intensified during the mid‐Pleistocene, goldfish are likely to have dispersed north‐eastwards to recolonize the Ryukyus via Taiwan and northwards to recolonize mainland China.

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Phylogeography of the freshwater catfish Hemibagrus guttatus (Siluriformes, Bagridae): Implications for South China biogeography and influence of sea-level changes

Cited by 30 publications

References 21 publications

Invasive Cyprinid Fish in Europe Originate from the Single Introduction of an Admixed Source Population Followed by a Complex Pattern of Spread

Invasive Cyprinid Fish in Europe Originate from the Single Introduction of an Admixed Source Population Followed by a Complex Pattern of Spread

Genetic diversity and population history ofTanichthys albonubes(Teleostei: Cyprinidae): Implications for conservation

Quaternary palaeoenvironmental oscillations drove the evolution of the Eurasian Carassius auratus complex (Cypriniformes, Cyprinidae)

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