In heterothallic Ascomycota, two opposite but distinct mating types control all sexual processes. Using mating crosses on agar plates, the heterothallic nature of the wood-inhabiting fungus Ophiostoma quercus was confirmed and mating types were assigned to 10 isolates. Primers were subsequently designed to target both the mating type 1 (MAT1-1) and 2 (MAT1-2) idiomorphs in these isolates. The results showed that all isolates contained sequence fragments representing both idiomorphs. This was unexpected, as each isolate from a heterothallic species would typically contain only one of the two possible MAT idiomorphs. An atypical mating system such as the one described in this study has not previously been encountered in any other Ascomycota mating locus described to date.