Permanent Genetic Resources added to Molecular Ecology Resources Database 1 October 2009–30 November 2009

An, Junghwa; Béchet, Arnaud; Berggren, Åsa; Brown, Sarah K.; Bruford, Michael William; CAI, QINGUI; Cassel‐Lundhagen, Anna; Cézilly, Frank; CHEN, SONG‐LIN; Cheng, Wei; Choi, Sungkyoung; Ding, Xinru; FAN, YONG; Feldheim, Kevin A.; Feng, Zhenming; Friesen, Vicki L.; Gaillard, María Emilia; GALARAZA, JUAN A.; Gallo, Leonardo; Ganeshaiah, K. N.; Geraci, J. B.; Gibbons, John G.; Grant, W. Stewart; Grauvogel, Zac; Gustafsson, Sofia; Guyon, Jeffrey R.; Li, Han; Heath, Daniel D.; Hemmilä, Sofia; Hogan, J. Derek; Hou, Beiwei; Jakse, Jernej; Javornik, Branka; Kaňuch, Peter; KIM, KYUNG‐KIL; KIM, KYUNG‐SEOK; KIM, SANG‐GYU; KIM, SANG‐IN; KIM, WOO‐JIN; KIM, YI‐KYUNG; Klich, M. A.; Kreiser, Brian R.; Kwan, Ye-Seul; Lam, Athena; Lasater, Kelly; Lascoux, Martin; LEE, HANG; LEE, YUN‐SUN; LI, D.L.; LI, SHAO‐JING; LI, W.Y.; Liao, Xuhong; Liber, Zlatko; Lin, Lin; Liu, Shaoying; Luo, Xinhui; Ma, Yinchen; Ma, Yajun; Marchelli, Paula; Min, Mi‐Sook; Moccia, Maria; Mohana, Kumara P.; Moore, Marcelle; Morris‐Pocock, James A.; Park, Han-Chan; PFUNDER, MONIKA; IVAN, RADOSAVLJEVIĆ; Ravikanth, G.; Roderick, George; Rokas, Antonis; Sacks, Benjamin N.; Saski, Christopher; Šatović, Zlatko; Schoville, Sean D.; Sebastiani, Federico; Sha, Zhenxia; Shin, Eun-Ha; Soliani, Carolina; Sreejayan, N.; Sun, Zhengxin; Tao, Yong Gui; Taylor, Scott A.; Templin, William D.; Shaanker, R. Uma; Vasudeva, R.; Vendramin, Giovanni G.; Walter, Ryan P.; Wang, Guizhong; WANG, KE‐JIAN; WANG, Y.Q.; Wattier, Rémi A.; Wei, Fuwen; Widmer, Alex; Woltmann, Stefan; Won, Yong-Jin; Wu, Jing; Xie, M. L.; Xu, Genbo; XU, XIAO‐JUN; YE, HAI‐HUI; Zhan, Xiangjiang; ZHANG, F.; Zhong, Jiaying

doi:10.1111/j.1755-0998.2009.02827.x

Cited by 64 publications

(21 citation statements)

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“…Including previously published di- and tri-nucleotide microsatellite loci [24,25] and the primers published in this study, we were able to test 29 Dalmatian sage microsatellite markers for cross-amplification in short-tooth sage. The amplification rate was 52%.…”

Section: Resultsmentioning

confidence: 99%

“… N = number of individuals; N a = number of alleles; H O = observed heterozygosity; H E = expected heterozygosity; PIC = polymorphic information content; CA = common alleles;a= previously published di-nucleotide microsatellite loci [24];b= previously published tri-nucleotide microsatellite loci [25];*= significant deviations from Hardy-Weinberg equilibrium after sequential Bonferroni corrections at the 0.1% nominal level.…”

Section: Figurementioning

confidence: 99%

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Development of New Microsatellite Markers for Salvia officinalis L. and Its Potential Use in Conservation-Genetic Studies of Narrow Endemic Salvia brachyodon Vandas

Radosavljević

Šatović

Jakse

et al. 2012

IJMS

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Nine new microsatellite markers (SSR) were isolated from Salvia officinalis L. A total of 125 alleles, with 8 to 21 alleles per locus, were detected in a natural population from the east Adriatic coast. The observed heterozygosity, expected heterozygosity, and polymorphic information content ranged from 0.46 to 0.83, 0.73 to 0.93 and 0.70 to 0.92, respectively. New microsatellite markers, as well as previously published markers, were tested for cross-amplification in Salvia brachyodon Vandas, a narrow endemic species known to be present in only two localities on the Balkan Peninsula. Out of 30 microsatellite markers tested on the natural S. brachyodon population, 15 were successfully amplified. To obtain evidence of recent bottleneck events in the populations of both species, observed genetic diversity (HE) was compared to the expected genetic diversity at mutation-drift equilibrium (HEQ) and calculated from the observed number of alleles using a two-phased mutation model (TPM). Recent bottleneck events were detected only in the S. brachyodon population. This result suggests the need to reconsider the current threat category of this endemic species.

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Section: Resultsmentioning

confidence: 99%

Section: Figurementioning

confidence: 99%

Development of New Microsatellite Markers for Salvia officinalis L. and Its Potential Use in Conservation-Genetic Studies of Narrow Endemic Salvia brachyodon Vandas

Radosavljević

Šatović

Jakse

et al. 2012

IJMS

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“…Here, we report the first application of microsatellite loci from a domesticated red fox genome (Yan, unpublished) to natural fox populations. However, before using these loci in future studies, we recommend the redesign of primers based on DNA sequences from the study populations to avoid allele dropout due to primer binding site mismatches (Moore et al 2010). This should reduce allele dropout and allow more loci to be retained in the final panel.…”

Section: Discussionmentioning

confidence: 99%

The influence of habitat structure on genetic differentiation in red fox populations in north-eastern Poland

et al. 2014

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The red fox (Vulpes vulpes) has the widest global distribution among terrestrial carnivore species, occupying most of the Northern Hemisphere in its native range. Because it carries diseases that can be transmitted to humans and domestic animals, it is important to gather information about their movements and dispersal in their natural habitat but it is difficult to do so at a broad scale with trapping and telemetry. In this study, we have described the genetic diversity and structure of red fox populations in six areas of north-eastern Poland, based on samples collected from 2002–2003. We tested 22 microsatellite loci isolated from the dog and the red fox genome to select a panel of nine polymorphic loci suitable for this study. Genetic differentiation between the six studied populations was low to moderate and analysis in Structure revealed a panmictic population in the region. Spatial autocorrelation among all individuals showed a pattern of decreasing relatedness with increasing distance and this was not significantly negative until 93 km, indicating a pattern of isolation-by-distance over a large area. However, there was no correlation between genetic distance and either Euclidean distance or least-cost path distance at the population level. There was a significant relationship between genetic distance and the proportion of large forests and water along the Euclidean distances. These types of habitats may influence dispersal paths taken by red foxes, which is useful information in terms of wildlife disease management.Electronic supplementary materialThe online version of this article (doi:10.1007/s13364-014-0180-2) contains supplementary material, which is available to authorized users.

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“…Seven hundred and sixty two individuals (Table 3) were amplified for 15 microsatellites loci specifically designed for Phoenicopterus roseus : PrA2, PrD3, PrD4, PrD5, PrD7, PrD9, PrA102, PrA110, PrA113, PrC101, PrC109, PrD102, PrD108, PrD121 and PrD126 (An et al 2010). Genotyping was performed on a 96 capillary sequencer ABI3730XL (GENTYANE, INRA, France).…”

Section: Methodsmentioning

confidence: 99%

Greater flamingo colonies around the Mediterranean form a single interbreeding population and share a common history

Geraci¹,

Béchet²,

Cézilly³

et al. 2012

Journal of Avian Biology

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The greater flamingo Phoenicopterus roseus is a long‐lived colonial waterbird species, characterized by a large range encompassing three continents, a very limited number of breeding sites, and high dispersal abilities. We investigated both the phylogeographic history and the contemporary extent of genetic differentiation between eight different Mediterranean breeding colonies of greater flamingos sampled between 1995 and 2009, using both mitochondrial DNA and microsatellite markers. We found no significant differences in allelic richness or private allelic richness in relation to colony size. Overall, no genetic population differentiation was detected using either mitochondrial or microsatellite markers. F‐statistics and Bayesian clustering methods did not support any significant genetic structure. Analysis of both mitochondrial DNA and microsatellites indicated that populations have undergone a bottleneck followed by rapid growth and expansion. The average time since expansion was estimated to be 696 421 yr (90% CI: 526 316–1 131 579 yr). We discuss our results in relation to both the possible historical events accounting for the present genetic structure and relevance to conservation and management of the species.

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Permanent Genetic Resources added to Molecular Ecology Resources Database 1 October 2009–30 November 2009

Cited by 64 publications

References 0 publications

Development of New Microsatellite Markers for Salvia officinalis L. and Its Potential Use in Conservation-Genetic Studies of Narrow Endemic Salvia brachyodon Vandas

Development of New Microsatellite Markers for Salvia officinalis L. and Its Potential Use in Conservation-Genetic Studies of Narrow Endemic Salvia brachyodon Vandas

The influence of habitat structure on genetic differentiation in red fox populations in north-eastern Poland

Greater flamingo colonies around the Mediterranean form a single interbreeding population and share a common history

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