This study investigated the parasites of three commercially important bivalve species (Crassostrea rhizophorae, Mytella guyanensis and Lucina pectinata) from the southern coast of Bahia, Brazil. A total of 540 specimens were collected in August 2009 and February 2010, at three localities. The bivalve specimens were measured on their longest axis, opened, and macroscopically examined for the presence of parasites or signs of disease. They were then fixed in Davidson' solution and subjected to routine histological processing, with paraffin embedding and H&E staining; next, the specimens were examined under a light microscope. . Nematopsis sp. ocorreu em alta prevalência, porém, aparentemente, não causou danos aos bivalves. Bucephalus sp. causou destruição de tecidos, com castração, mas foi pouco prevalente. Os demais parasitos ocorreram em baixa prevalência e intensidade de infecção e sem causar danos.