Encapsulation of melatonin by niosomes for intranasal delivery was developed to serve the purpose as a supportive care adjuvant in cancer patients with certain conditions such as unconsciousness or GI disturbance due to side effects of chemotherapy, and to avoid its high first pass metabolism. Intranasal administration of melatonin niosomes to male Wistar rats (average body weight 150 g) at a daily dose of 20 mg/kg/d for 90 days did not show histological changes when compared to its control. FTIR of the nasal epithelium, liver, hypothalamus and testis detected some possible effect of melatonin on the membranous lipids and proteins. Melatonin niosomes of about 100 nm, intranasally administered, could distribute melatonin to the liver, hypothalamus and testis.