“…The genes were ranked by the frequency of enrichments in biological process. Of the top 10 genes in HMLncs, nine were demonstrated to be associated with BRCA: FOXJ1 [ 31 ], HDAC2 [ 32 ], WNT1 [ 33 ], SOX18 [ 34 ], NOTCH4 [ 35 ], SP3 [ 36 ], HOXA11 [ 37 ], HOXC11 [ 38 ] and FOXD3 [ 39 ]. In addition, there were six genes coding transcription factors in the top 10 genes ( FOXJ1 , SOX18 , SP3 , HOXA11 , HOXC11 and FOXD3 ) (Figure 3E ).…”