Nocardioides sambongensis sp. nov., isolated from Dokdo Islands soil

Hwang, Ye-Ji; Son, Jin-Soo; Lee, Soo-Yeong; He, Yuxi; Jo, YoungJae; Shin, Jae‐Ho; Ghim, Sa‐Youl

doi:10.1099/ijsem.0.003689

Cited by 7 publications

(5 citation statements)

References 45 publications

Supporting

Mentioning

Contrasting

Order By: Relevance

“…albidus and N. sambongensis [3, 5, 6]. The strains had MK-8(H 4 ) as their major quinone and ll -diaminopimelic acid as the diagnostic diamino acid of their cell-wall peptidoglycan, which is the major respiratory quinone found in other members of the genus Nocardiodes [3–8].…”

Section: Full-textmentioning

confidence: 99%

“…The DNA G+C content of members of the genus Nocardioides is around 68-74 mol% [2]. Species in the genus Nocardioides have been isolated from various sources, such as soil, sludge of domestic wastewater and plants [3][4][5][6][7][8]. Many strains of the genus Nocardioides play an important role in bioremediation and they decompose various pollutants such as alkanes, pyridine, phenols, phenanthrene, etc.…”

mentioning

confidence: 99%

“…The strains differed from Nocardioides species by the absence of a phosphatidylinositol. However, it is worth noting that the absences of phosphatidylinositol also occurs in N. dilutes, N. albidus and N. sambongensis [3,5,6]. The strains had MK-8(H 4 ) as their major quinone and ll-diaminopimelic acid as the diagnostic diamino acid of their cell-wall peptidoglycan, which is the major respiratory quinone found in other members of the genus Nocardiodes [3][4][5][6][7][8].…”

mentioning

confidence: 99%

See 2 more Smart Citations

Nocardioides convexus sp. nov. and Nocardioides anomalus sp. nov., isolated from soil and mineral water

Park

Liu

Maeng

et al. 2020

International Journal of Systematic and Evolutionary Microbiology

View full text Add to dashboard Cite

Two bacterial strains designated as W3-2-3T and HKS04T were isolated from mineral water and a soil sample, respectively, in the Republic of Korea. The 16S rRNA genes of the two strains shared a sequence similarity of 93.5 %. Phylogenetic analysis based on 16S rRNA gene sequences showed that strains W3-2-3T and HKS04T formed a distinct lineage within the genus Nocardioides of the family Nocardioidaceae (order Propionibacteriales ). The closely related species of strain W3-2-3T were Nocardioides albidus (98.9 %), Nocardioides caeni (98.8 %), Nocardioides kongjuensis (98.6 %), Nocardioides aromaticivorans (98.5 %), Nocardioides nitrophenolicus (98.4 %), Nocardioides flava (98.2 %) and Nocardioides ginsengisoli (98.1 %). The closest species of strain HKS04T was Nocardioides halotolerans (98.7 %). The genome sizes of strains W3-2-3T and HKS04T were 4741198 and 5 120341 bp, respectively. The genomic DNA G+C contents of strains W3-2-3T and HKS04T were 73.3 and 72.1 mol%, respectively. The main fatty acids of strain W3-2-3T were C17:1 ω6c and iso-C16:0 and those of strain HKS04T were iso-C16:0 and iso-C16:0 H. The main polar lipids of both strains were diphosphatidylglycerol and phosphatidylglycerol and the predominant respiratory quinone was MK-8(H4), supporting the affiliation of these strains with the genus Nocardioides . Based on the results of biochemical, chemotaxonomic and phylogenetic analyses, two novel species, Nocardioides convexus W3-2-3T (KACC 21211T=LMG 31251T) and Nocardioides anomalus HKS04T (KACC 18879T=LMG 31249T), are proposed.

show abstract

Section: Full-textmentioning

confidence: 99%

mentioning

confidence: 99%

mentioning

confidence: 99%

See 1 more Smart Citation

Nocardioides convexus sp. nov. and Nocardioides anomalus sp. nov., isolated from soil and mineral water

Park

Liu

Maeng

et al. 2020

International Journal of Systematic and Evolutionary Microbiology

View full text Add to dashboard Cite

show abstract

“…At the time of writing, this genus encompasses 122 validly published species with correct names (www.bacterio.net/genus/nocardioides). Nocardioides strains were isolated from various habitats including soil [2, 3], mud [4], marine sediment [5], glacier [6], caves [7], fresh water [8, 9], wastewater [10], faeces of wild animal [11–13], plant leaves [14] and roots [15]. Members of Nocardioides are Gram-stain-positive, rod- or coccus-shaped, non-acid-fast and either motile or non-motile with typical features including a high DNA G+C content (64.0–74.9 mol%), MK-8(H 4 ) as the predominant respiratory quinone, iso-C 16 : 0 as the major fatty acid and ll -2,6-diaminopimelic acid as the cell-wall peptidoglycan [16].…”

Section: Introductionmentioning

confidence: 99%

Nocardioides dongkuii sp. nov. and Nocardioides lijunqiniae sp. nov., isolated from faeces of Tibetan antelope (Pantholops hodgsonii) and leaves of dandelion (Taraxacum officinale), respectively, on the Qinghai–Tibet Plateau

Cheng

Jiao

Zhang

et al. 2021

International Journal of Systematic and Evolutionary Microbiology

View full text Add to dashboard Cite

In the present study, four bacterial strains, two (S-713 T and 406) isolated from faecal samples of Tibetan antelopes and the other two (S-531 T and 1598) from leaves of dandelion collected on the Qinghai–Tibet Plateau of PR China, were analysed using a polyphasic approach. All four isolates were aerobic, rod-shaped, non-motile, oxidase-negative, Gram-stain-positive and catalase-positive. According to four phylogenetic trees, strain pairs S-713 T /406 and S-531 T /1598 form two independent branches belonging to the genus Nocardioides , and are closest to Nocardioides lianchengensis , Nocardioides dokdonensis , Nocardioides salarius , Nocardioides marinisabuli , Nocardioides psychrotolerans and Nocardioides szechwanensis . Although sharing MK8-(H 4 ) as their major isoprenoid quinone, strains S-713 T and S-531 T contained C 18 : 1 ω 9 c (24.64 and 16.34 %) and iso-C 16 : 0 (9.74 and 29.38 %), respectively, as their main fatty acids, with remarkable differences in their biochemical profiles but only slight ones in their optimal growth conditions. The chromosomes of strains S-713 T and S-531 T were 4 207 844 bp (G+C content, 73.0 mol%) and 4 809 817 bp (G+C content, 72.5 mol%), respectively. Collectively, the two strain pairs represent two separate novel species of the genus Nocardioides , for which the names Nocardioides dongkuii sp. nov. and Nocardioides lijunqiniae sp. nov. are proposed, with S-713 T (=JCM 33698 T =CGMCC 4.7660 T ) and S-531 T (=JCM 33468 T =CGMCC 4.7659 T ) as the respective type strains.

show abstract

“…de/ genus/ nocardioides) [2], the genus Nocardioides currently comprises 124 species with valid names within the genus Nocardioides. They have been isolated from diverse environmental habitats such as soil, industrial wastewater and marine sediment [3][4][5][6][7][8][9]. Nocardioides species are Gram-stain-positive, coccus-or rod-shaped bacteria that contains MK-8(H 4 ) as the predominant respiratory quinone, and phosphatidylethanolamine, diphosphatidylglycerol and phosphatidylglycerol as the major polar lipids.…”

Section: Introductionmentioning

confidence: 99%

Nocardioides donggukensis sp. nov. and Hyunsoonleella aquatilis sp. nov., isolated from Jeongbang Waterfall on Jeju Island

Kim

Chhetri

Kim

et al. 2021

International Journal of Systematic and Evolutionary Microbiology

View full text Add to dashboard Cite

Two bacterial strains, designated MJB4T and SJ7T, were isolated from water samples collected from Jeongbang Falls on Jeju Island, Republic of Korea. Phylogenetic analysis of 16S rRNA gene sequences indicated that the two strains belonged to the genera Nocardioides and Hyunsoonleella , owing to their high similarities to Nocardioides jensenii DSM 29641T (97.5 %) and Hyunsoonleella rubra FA042 T (96.3 %), respectively. These values are much lower than the gold standard for bacterial species (98.7 %). The average nucleotide identity values between strains MJB4T, SJ7T and the reference strains, Nocardioides jensenii DSM 29641T, Nocardioides daejeonensis MJ31T and Hyunsoonleella flava T58T were 77.2, 75.9 and 75.4 %, respectively. Strains MJB4T and SJ7T and the type strains of the species involved in system incidence have average nucleotide identity and average amino acid threshold values of 60.1–82.6 % for the species boundary (95–96 %), which confirms that strains MJB4T and SJ7T represent two new species of genus Nocardioides and Hyunsoonleella , respectively. Based on phylogenetic and phenotypic data, strains MJB4T and SJ7T are considered to represent novel species of the genus Nocardioides and Hyunsoonleella , respectively, for which the names Nocardioides donggukensis sp. nov. (type strain MJB4T=KACC 21724T=NBRC 114402T) and Hyunsoonleella aquatilis sp. nov., (type strain SJ7T=KACC 21715T=NBRC 114486T) have been proposed.

show abstract

Nocardioides sambongensis sp. nov., isolated from Dokdo Islands soil

Cited by 7 publications

References 45 publications

Nocardioides convexus sp. nov. and Nocardioides anomalus sp. nov., isolated from soil and mineral water

Nocardioides convexus sp. nov. and Nocardioides anomalus sp. nov., isolated from soil and mineral water

Nocardioides dongkuii sp. nov. and Nocardioides lijunqiniae sp. nov., isolated from faeces of Tibetan antelope (Pantholops hodgsonii) and leaves of dandelion (Taraxacum officinale), respectively, on the Qinghai–Tibet Plateau

Nocardioides donggukensis sp. nov. and Hyunsoonleella aquatilis sp. nov., isolated from Jeongbang Waterfall on Jeju Island

Contact Info

Product

Resources

About