Epilithic mosses are early colonizers of the terrestrial biosphere, which constitute a special ecosystem regulating rock‐atmosphere interactions. Terrestrial mosses can take up nitrate (NO3−), a major form of bioavailable N, from soil substrates. However, the importance of substrate NO3− relative to atmospheric NO3− remains unclear in moss NO3− utilization. This has prevented the understanding of moss NO3− dynamics and their responses to environmental N loadings. This study investigated monthly concentrations, δ15N, and δ18O of NO3− in four epilithic moss species from August 2006 to August 2007 in Guiyang, southwestern China. We developed a non‐steady state isotope mass‐balance model to evaluate fractional contributions of atmospheric NO3− (Фatm) and soil NO3− (Фsoil), moss NO3− uptake flux (Finflux), moss NO3− reduction flux (Freduction), and the percentage of NO3− reduction in moss NO3− uptake (freduced). The monthly Фsoil values averaged 53 ± 13% and the monthly freduced values averaged 50 ± 35%. Both the monthly Freduction and freduced increased as the monthly Finflux increased, particularly when the Фsoil values were higher than Фatm values. However, the amount of annual NO3− reduction (219.7 ± 30.5 μg‐N/g, dw) accounted for only 1.0 ± 0.2% of the bulk N of the mosses. We conclude that half of the NO3− in epilithic mosses is derived from the soil NO3− and that NO3− uptake from the soil induces moss NO3− reduction, but the total NO3− assimilation contributed a low fraction of the total N in the studied mosses. These findings are important for understanding N sources and N dynamics in terrestrial mosses.