Background Dysbiosis has been associated to increased microbial translocation, leading to chronic inflammation in cardiovascular diseases (CVD). It has been proposed that modulation of gut microbiota by probiotic might modify metabolic endotoxemia. Therefore, the purpose of this study was to examine the effects of Lactobacillus rhamnosus GG (LGG) on metabolic endotoxemia, Trimethylamine-N-oxide (TMAO) and gut microbiota profiles in CVD subjects.Methods A 12-week randomized, double-blind, intervention on 44 patients with CVD. Patients were randomly allocated to receive either one LGG capsules 1.6 ×10 9 colony-forming unit (CFU) or the placebo capsules for 12 weeks. Gut microbiota profile and serum levels of interleukin‐1β (IL‐1β), Toll‐like receptor 4(TLR4), interleukin‐10(IL‐10), lipopolysaccharide(LPS), and TMAO were assessed before and after the intervention.Results A significant decrease in IL1-Beta concentration(-1.88 ± 2.25, vs. 0.56 ± 1.58 mmol/L, P=0.027), LPS levels(-5.20 ±2.70 vs. 2.96+ 5.27 mg/L, P=0.016), and TMAO levels (-19.34±20.40 vs. -6.45±7.7 mmol/L, P=0.043) was observed after the probiotic supplementation compared with the placebo. L. rhamnosus statically increased in intervention group while Bacteroidetes non - significantly increased in both groups. Subjects who had ≥2.5 kg weight loss showed significantly improved in some variables, compared to patients with <2.5 kg weight reduction, regardless of the supplement they receive. Regression analysis revealed that baseline TMAO, changes of protein intakes and IL1-Beta predicted 58% of the final TMAO levels.Conclusion : These data provide preliminary evidence that probiotic supplementation has beneficial effects on depressive symptoms, metabolic endotoxemia, TMAO, and gut microbiota profile in subjects with CVD.