“…Additionally, we observed upregulation of genes involved in cholesterol biosynthesis, a process known to be important for betaherpesvirus replication and T cell function but less well studied for thymocyte development (74,126). We also noted downregulation of genes known to be essential for maturation of DN and DP cells, including Cd4, Cd8, Rag1, Rag2, Tcf7, Themis, Lat, Rorc, Lck, Zap70, Cd5, Cd27, CD28, Bcl11b, Tox, and genes in the PluriNetwork pathway that are involved in pluripotency and cell fate (42,50,54,102,(127)(128)(129)(130)(131)(132). The thymocyte-expressed molecule involved in selection (Themis) has been well characterized as a major player in the maturation and selection of thymocytes (128).…”