A series of pyrimidinophanes containing two uracil units and nitrogen atoms in bridging polymethylene chains -(CH 2 ) n N(Et)(CH 2 ) m -(n, m = 5, 6) have been synthesized. The uracil moieties are represented by 6-methyl-, 5-decyl-6-methyl-, and 5-fluorouracils. Quaternization of the bridging N atom with ethylbromide or n-decylbromide yielded amphiphilic pyrimidinophanes, which were evaluated for their antibacterial and antifungal activity in terms of minimal inhibiting concentration (MIC) against Gram-positive and Gram-negative bacteria and fungi. It has been found that MICs of the amphiphilic pyrimidinophanes decrease with increasing lipophilicity of the alkyl substituents at the bridging N atoms and with increasing polymethylene N(pyr)-N chain length (in some cases MIC against Staphylococcus aureus is below 1 ìg/mL). The MICs increase dramatically upon introduction of lipophilic n-decyl substituents at C(5) atoms of the uracil moiety. The results can be used in the search for new highly effective antimicrobial agents.Amphiphilic compounds that contain natural peptide structural moieties with antimicrobial activity have recently attracted interest as antimicrobial agents. In most instances these compounds are oligomers, for example, amphiphilic polymethacrylates [1], polynorbornenes [2], and polyvinylalcohols [3] with ammonium groups.We synthesized for the first time macrocyclic amphiphilic compounds that were isomeric pyrimidinophanes consisting of 2,6-methyluracil moieties linked to each other through the N(1) and N(3) atoms of the pyrimidine rings by bridging -(CH 2 ) n N + (Et)(R)(CH 2 ) m -[n = 5, 6; R = Bn, CH 3 (CH 2 ) 9 ] [4]. These macrocycles can be viewed as low-molecular-weight cyclic oligomers. Herein we explain the effect of the lipophilic substituent in either the onium groups in the bridges or the uracil moiety on the antimicrobial and antifungal activity.We synthesized a series of isomeric pyrimidinophanes (IIIa -b -VIIIa -b) in which the length of the methylene chains and the lipophilicity of the uracyl moieties and onium groups in the bridge were varied by introducing into them n-decyl substituents. Macrocycles with other substituents on the pyrimidine rings, in particular with 5-fluorouracil moieties (pyrimidinophanes VIIa and -b), were also examined. 5-Decyluracil (XI) was synthesized using the following reaction sequence. Condensation of the ethyl ester of 3-decylacetoacetic acid (IX) with thiourea produced 2-thio-4-oxo-1,2,3,4-tetrahydro-5-decyl-6-methylpyrimidine (X) that was hydrolyzed in the presence of chloroacetic acid to XI (Scheme 1). Next, 1,3-bis(w-bromopentyl-or -hexyl-)-5-decyl-6-methyl-or 6-methyl-or 5-fluorouracils (XIIIa -e) were synthesized from the disodium salt of the corresponding uracil (XIIa -c) and the a,w-dibromoalkane in DMF according to the known procedure. Some of these were reacted with an excess of ethylamine to give 1,3-bis(wethylaminopentyl-or -hexyl-)-5-decyl-6-methyl-or 6-methyluracils (XIVa -c) (Scheme 2) [4,5].Reaction of the resulting dibromides (XIIIa -e...