Abstract:Fibromyalgia is a rheumatological disorder that causes chronic pain and other symptomatic conditions such as depression and anxiety. Despite its relevance, the disease still presents a complex diagnosis where the doctor needs to have a correct clinical interpretation of the symptoms. In this context, it is valid to study tools that assist in the screening of this disease, using chemical work techniques such as mass spectroscopy. In this study, an analytical method is proposed to detect individuals with fibromy… Show more
“…This m/z ratio value was indicated in the analysis of PC1 loadings, being present in most data sets. Another reason that highlights this finding is in a previous study 18 which also confirms the presence of compounds of the lysophosphatidylcholine class in the samples of the cases group, as well as in studies that present this class of metabolites as a possible biomarker or contributing factor to the fibromyalgia phenotype 31 , 32 .…”
Section: Discussionsupporting
confidence: 74%
“…Despite proposing some adjustments in the use of the criteria, the study concluded that the criteria had good sensitivity and specificity for all analyzed studies, with an average of 84% and 83%, respectively 8 . Recent studies have also demonstrated good sensitivity and specificity in classifying groups of patients with and without fibromyalgia, using blood plasma samples, among which: Passos et al 17 used ATR-FTIR spectroscopy, with results of 89.5% sensitivity and 79% specificity in the classification between controls and fibromyalgia patients using a GA-LDA model; while Alves et al 18 used PSI-MS mass spectrometry and reached values of 100% sensitivity and specificity using SPA-LDA and exploratory analyzes with PCA, with small groups of samples (10 controls and 10 fibromyalgia samples). The study presented herein obtained 100% sensitivity and 75% specificity (88% accuracy), with a total number of samples equal to 64 (27 controls and 37 fibromyalgia samples) for the classification performed with the PCA-LDA model in the set of data regarding the moderate CAT symptom.…”
Section: Discussionmentioning
confidence: 99%
“…Among these studies, it is possible to mention investigations of potential biomarkers for the disease with proteomic analysis using MALDI-TOF mass spectrometry in saliva sample 13 and metabolomics studies with the analysis of urine samples in Gas Chromatography Mass Spectrometry (GC–MS) 14 and blood plasma samples with Liquid Chromatography Mass Spectrometry (LC–MS) 15 . Classification studies are also mentioned, such as using Raman and Fourier-Transform Infrared (FTIR) spectroscopy in differentiating blood samples from patients with FM and other rheumatic diseases 16 ; and, discrimination between samples from patients with and without FM based on blood plasmas through Attenuated Total Reflection Fourier Transform Infrared (ATR-FTIR) spectroscopy 17 and Paper Spray Ionization Mass Spectrometry (PSI-MS) 18 .…”
This study performs a chemical investigation of blood plasma samples from patients with and without fibromyalgia, combined with some of the symptoms and their levels of intensity used in the diagnosis of this disease. The symptoms evaluated were: visual analogue pain scale (VAS); fibromyalgia impact questionnaire (FIQ); Hamilton anxiety rating scale (HAM); Tampa Scale for Kinesiophobia (TAMPA); quality of life Questionnaire—physical and mental health (QL); and Pain Catastrophizing Scale (CAT). Plasma samples were analyzed by paper spray ionization mass spectrometry (PSI-MS). Spectral data were organized into datasets and related to each of the symptoms measured. The datasets were submitted to multivariate classification using supervised models such as principal component analysis with linear discriminant analysis (PCA-LDA), successive projections algorithm with linear discriminant analysis (SPA-LDA), genetic algorithm with linear discriminant analysis (GA-LDA) and their versions with quadratic discriminant analysis (PCA/SPA/GA-QDA) and support vector machines (PCA/SPA/GA-SVM). These algorithm combinations were performed aiming the best class separation. Good discrimination between the controls and fibromyalgia samples were observed using PCA-LDA, where the spectral data associated with the CAT symptom achieved 100% classification sensitivity, and associated with the VAS symptom achieved 100% classification specificity, with both symptoms at the moderate level of intensity. The spectral variable at 579 m/z was found to be substantially significant for classification according to the PCA loadings. According to the human metabolites database, this variable can be associated with a LysoPC compound, which comprises a class of metabolites already evidenced in other studies for fibromyalgia diagnosis. This study proposed an investigation of spectral data combined with clinical data to compare the classification ability of different datasets. The good classification results obtained confirm this technique is as a good analytical tool for the detection of fibromyalgia, and provides theoretical support for other studies about fibromyalgia diagnosis.
“…This m/z ratio value was indicated in the analysis of PC1 loadings, being present in most data sets. Another reason that highlights this finding is in a previous study 18 which also confirms the presence of compounds of the lysophosphatidylcholine class in the samples of the cases group, as well as in studies that present this class of metabolites as a possible biomarker or contributing factor to the fibromyalgia phenotype 31 , 32 .…”
Section: Discussionsupporting
confidence: 74%
“…Despite proposing some adjustments in the use of the criteria, the study concluded that the criteria had good sensitivity and specificity for all analyzed studies, with an average of 84% and 83%, respectively 8 . Recent studies have also demonstrated good sensitivity and specificity in classifying groups of patients with and without fibromyalgia, using blood plasma samples, among which: Passos et al 17 used ATR-FTIR spectroscopy, with results of 89.5% sensitivity and 79% specificity in the classification between controls and fibromyalgia patients using a GA-LDA model; while Alves et al 18 used PSI-MS mass spectrometry and reached values of 100% sensitivity and specificity using SPA-LDA and exploratory analyzes with PCA, with small groups of samples (10 controls and 10 fibromyalgia samples). The study presented herein obtained 100% sensitivity and 75% specificity (88% accuracy), with a total number of samples equal to 64 (27 controls and 37 fibromyalgia samples) for the classification performed with the PCA-LDA model in the set of data regarding the moderate CAT symptom.…”
Section: Discussionmentioning
confidence: 99%
“…Among these studies, it is possible to mention investigations of potential biomarkers for the disease with proteomic analysis using MALDI-TOF mass spectrometry in saliva sample 13 and metabolomics studies with the analysis of urine samples in Gas Chromatography Mass Spectrometry (GC–MS) 14 and blood plasma samples with Liquid Chromatography Mass Spectrometry (LC–MS) 15 . Classification studies are also mentioned, such as using Raman and Fourier-Transform Infrared (FTIR) spectroscopy in differentiating blood samples from patients with FM and other rheumatic diseases 16 ; and, discrimination between samples from patients with and without FM based on blood plasmas through Attenuated Total Reflection Fourier Transform Infrared (ATR-FTIR) spectroscopy 17 and Paper Spray Ionization Mass Spectrometry (PSI-MS) 18 .…”
This study performs a chemical investigation of blood plasma samples from patients with and without fibromyalgia, combined with some of the symptoms and their levels of intensity used in the diagnosis of this disease. The symptoms evaluated were: visual analogue pain scale (VAS); fibromyalgia impact questionnaire (FIQ); Hamilton anxiety rating scale (HAM); Tampa Scale for Kinesiophobia (TAMPA); quality of life Questionnaire—physical and mental health (QL); and Pain Catastrophizing Scale (CAT). Plasma samples were analyzed by paper spray ionization mass spectrometry (PSI-MS). Spectral data were organized into datasets and related to each of the symptoms measured. The datasets were submitted to multivariate classification using supervised models such as principal component analysis with linear discriminant analysis (PCA-LDA), successive projections algorithm with linear discriminant analysis (SPA-LDA), genetic algorithm with linear discriminant analysis (GA-LDA) and their versions with quadratic discriminant analysis (PCA/SPA/GA-QDA) and support vector machines (PCA/SPA/GA-SVM). These algorithm combinations were performed aiming the best class separation. Good discrimination between the controls and fibromyalgia samples were observed using PCA-LDA, where the spectral data associated with the CAT symptom achieved 100% classification sensitivity, and associated with the VAS symptom achieved 100% classification specificity, with both symptoms at the moderate level of intensity. The spectral variable at 579 m/z was found to be substantially significant for classification according to the PCA loadings. According to the human metabolites database, this variable can be associated with a LysoPC compound, which comprises a class of metabolites already evidenced in other studies for fibromyalgia diagnosis. This study proposed an investigation of spectral data combined with clinical data to compare the classification ability of different datasets. The good classification results obtained confirm this technique is as a good analytical tool for the detection of fibromyalgia, and provides theoretical support for other studies about fibromyalgia diagnosis.
“…Features (NFF) questionnaire may be a valuable primary screening tool (7). • Studies underlined high salivary cortisol levels, alterations in metabolites involved in free radical, lipid and amino acid metabolism and in blood cytokine profiles (13)(14)(15)(16)). • Neuro-inflammation has been highlighted by OCT and [11C]-(R)-PK11195 PET (18,19).…”
Section: • the Nociplastic-based Fibromyalgiamentioning
“…[ 65 ] reported that PCA does more feature classification, while LDA does more data separation which is in accordance with our results. Likewise, previously reported data by Alves et al [ 66 ] applied nine different algorithms to find the best identification tool for fibromyalgia. They inferred that SPA-LDA is a reliable tool in the clinical diagnosis of fibromyalgia.…”
Cotton (Gossypium hirsutum) is an economically important crop and is widely cultivated around the globe. However, the major problem of cotton is its high vulnerability to biotic and abiotic stresses. It has been around three decades since the cotton plant was genetically engineered with genes encoding insecticidal proteins (mainly Cry proteins) with an aim to protect it against insect attack. Several studies have been reported on the impact of these genes on cotton production and fiber quality. However, the metabolites responsible for conferring resistance in genetically modified cotton need to be explored. The current work aims to unveil the key metabolites responsible for insect resistance in Bt cotton and also compare the conventional multivariate analysis methods with deep learning approaches to perform clustering analysis. We aim to unveil the marker compounds which are responsible for inducing insect resistance in cotton plants. For this purpose, we employed 1H-NMR spectroscopy to perform metabolite profiling of Bt and non-Bt cotton varieties, and a total of 42 different metabolites were identified in cotton plants. In cluster analysis, deep learning approaches (linear discriminant analysis (LDA) and neural networks) showed better separation among cotton varieties compared to conventional methods (principal component analysis (PCA) and orthogonal partial least square discriminant analysis (OPLSDA)). The key metabolites responsible for inter-class separation were terpinolene, α-ketoglutaric acid, aspartic acid, stigmasterol, fructose, maltose, arabinose, xylulose, cinnamic acid, malic acid, valine, nonanoic acid, citrulline, and shikimic acid. The metabolites which regulated differently with the level of significance p < 0.001 amongst different cotton varieties belonged to the tricarboxylic acid cycle (TCA), Shikimic acid, and phenylpropanoid pathways. Our analyses underscore a biosignature of metabolites that might involve in inducing insect resistance in Bt cotton. Moreover, novel evidence from our study could be used in the metabolic engineering of these biological pathways to improve the resilience of Bt cotton against insect/pest attacks. Lastly, our findings are also in complete support of employing deep machine learning algorithms as a useful tool in metabolomics studies.
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