Human glutaminyl-tRNA synthetase (QRS) is one of several mammalian aminoacyl-tRNA synthetases (ARSs) that form a macromolecular protein complex. To understand the mechanism of QRS targeting to the multi-ARS complex, we analyzed both exogenous and endogenous QRSs by immunoprecipitation after overexpression of various Myc-tagged QRS mutants in human embryonic kidney 293 cells. Whereas a deletion mutant containing only the catalytic domain (QRS-C) was targeted to the multi-ARS complex, a mutant QRS containing only the N-terminal appended domain (QRS-N) was not. Deletion mapping showed that the ATP-binding Rossman fold was necessary for targeting of QRS to the multi-ARS complex. Furthermore, exogenous Myc-tagged QRS-C was co-immunoprecipitated with endogenous QRS. Since glutaminylation of tRNA was dramatically increased in cells transfected with the full-length QRS, but not with either QRS-C or QRS-N, both the QRS catalytic domain and the N-terminal appended domain were required for full aminoacylation activity. When QRS-C was overexpressed, arginyl-tRNA synthetase and p43 were released from the multi-ARS complex along with endogenous QRS, suggesting that the N-terminal appendix of QRS is required to keep arginyl-tRNA synthetase and p43 within the complex. Thus, the eukaryote-specific N-terminal appendix of QRS appears to stabilize the association of other components in the multi-ARS complex, whereas the C-terminal catalytic domain is necessary for QRS association with the multi-ARS complex.Aminoacyl-tRNA synthetases (ARSs) 1 catalyze the ligation of a specific amino acid to its cognate tRNA, thereby ensuring the faithful translation of genetic code. Although catalytic domains from homologous synthetases are highly conserved from bacteria to mammals, mammalian ARSs have acquired unique peptide appendices that are not present in the corresponding prokaryotic enzymes (1-3). Eight of the mammalian ARSs are found in a high molecular weight multi-ARS complex with three noncatalytic proteins, p43, p38, and p18, whereas the corresponding bacterial ARSs do not form such a complex (1-4). This suggests that the peptide appendices might be involved in protein-protein interactions within the multi-ARS complex. Furthermore, intact rat aspartyl-tRNA synthetase (DRS) associates in vivo with the multi-ARS complex, whereas the Nterminal appendix-deleted form does not (5), indicating that the appended domain is indispensable for targeting DRS to this complex. Protein-protein interactions between the appendices of various ARSs have previously been shown using the yeast two-hybrid system (6). Similarly, p43 associates with the Nterminal appendix of human arginyl-tRNA synthetase (RRS), stimulating its aminoacylation activity (7).In addition to a role in protein-protein interactions, ARS appended domains could also enhance aminoacylation activity by recruiting tRNAs. Previously it has been shown that the N-terminal appended domain of yeast QRS nonspecifically binds to both double-and single-stranded RNA (8). Fusion of this domain to Esch...