Mutations
to RAS proteins (H-, N-, and K-RAS) are among the most
common oncogenic drivers, and tumors harboring these lesions are some
of the most difficult to treat. Although covalent small molecules
against KRAS
G12C
have shown promising efficacy against
lung cancers, traditional barriers remain for drugging the more prevalent
KRAS
G12D
and KRAS
G12V
mutants. Targeted degradation
has emerged as an attractive alternative approach, but for KRAS, identification
of the required high-affinity ligands continues to be a challenge.
Another significant hurdle is the discovery of a hybrid molecule that
appends an E3 ligase-recruiting moiety in a manner that satisfies
the precise geometries required for productive polyubiquitin transfer
while maintaining favorable druglike properties. To gain insights
into the advantages and feasibility of KRAS targeted degradation,
we applied a protein-based degrader (biodegrader) approach. This workflow
centers on the intracellular expression of a chimeric protein consisting
of a high-affinity target-binding domain fused to an engineered E3
ligase adapter. A series of anti-RAS biodegraders spanning different
RAS isoform/nucleotide-state specificities and leveraging different
E3 ligases provided definitive evidence for RAS degradability. Further,
these established that the functional consequences of KRAS degradation
are context dependent. Of broader significance, using the exquisite
degradation specificity that biodegraders can possess, we demonstrated
how this technology can be applied to answer questions that other
approaches cannot. Specifically, application of the GDP-state specific
degrader uncovered the relative prevalence of the “off-state”
of WT and various KRAS mutants in the cellular context. Finally, if
delivery challenges can be addressed, anti-RAS biodegraders will be
exciting candidates for clinical development.