Molecular phylogeny of trees species in Tripa Peat Swamp Forest, Aceh, Indonesia inferred by 5.8S nuclear gen

Abstract

Authors. 2018. Molecular phylogeny of trees species in Tripa Peat Swamp Forest, Aceh, Indonesia inferred by 5.8S nucleargen. Biodiversitas 19: 1186-1193. Tripa peat swamp forest is protected areas that have high biodiversity. Nevertheless, in some areas,the damage occurred due to conversions of land function to oil palm plantations. The impact of conversions of peat swamp forest to oilpalm plantations has led to biodiversity decreased. Hence, it is important to identify the remain tree species in Tripa peat swamp forest.This study aimed to determine of trees species diversity in Tripa peat swamp forest by using of 5.8S rRNA nuclear gene. Research wasconducted at Forest Genetics and Molecular Forestry Laboratory, Faculty of Forestry, IPB from September 2015 to August 2016.Molecular identification consisted of DNA extraction, PCR analysis, and sequencing. The data were analyzed using Bioedit, MEGA 6,BLAST, and ITS2 database. Molecular identification using ITS 1 and ITS 4 primer successfully amplified (the ITS region ITS1-5.8SITS2)of 16 trees species from 9 families. BLAST analysis results indicate the presence of 16 species has similar bases sequence withthe GeneBank DNA database. The plant species are Branckenridgea palustris (Ochnaceae), Gonystylus sp. (Thymelaeaceae),Tristaniopsis whiteana (Myrtaceae), Syzygium sp.1 (Myrtaceae), Macaranga triloba (Euphorbiaceae), Syzygium garciniifolium(Myrtaceae), Knema intermedia (Myristicaceae), Palaquium ridleyi (Sapotaceae), Palaquium sp. (Sapotaceae), Dyera lowii(Apocynaceae), Elaeocarpus petiolatus (Elaeocarpaceae), Ficus sp. (Moraceae), Syzygium leptostemon (Myrtaceae), Chilocarpussuaveolens (Apocynaceae), Alstonia pneumatophora (Apocynaceae), and Alstonia sp. (Apocynaceae). Phylogeny tree reconstructionusing the Neighbor-Joining Method (NJ) showed that 5.8S rRNA nuclear gene was successful as marker for 16 trees species from 9different families. In addition, the 5.8S also successful for resolving phylogenetic relationships at genus level i.e. Alstonia, Palaquium,Syzygium, Tristaniopsis, Macaranga, Elaeocarpus, and Ficus.

Searching for potential wood biomass for green energy feedstock: A study in tropical swamp-peat forest of Kutai Kertanegara, Indonesia

“…These species are: S. caudatilimbum, S. chloranthum and T. Obovata. Almost similar with this finding, Thomy et al (2018) and Yulisma et al (2018) reported that the most dominant species in Tripa peat swamp forest, Aceh have also belonged to Myrtaceae and Dipterocarpaceae. The dominant presence of Myrtaceae members may be related to their genetic and adaptability factors (Yulisma et al 2018).…”

The diversity, distribution, biomass, and conservation status of ichthyofauna of the Singkil peat swamp in Aceh Province, Indonesia

“…However, unfortunately, the peat swamp ecosystem in Aceh is highly threatened (Djufri et al 2016). Several studies identified the major factors affecting peat swamps in Aceh and Indonesia, including deforestation, land conversion to palm oil plantations and settlements, and fire forests during the dry season (Muchlisin et al 2015a;Thomy et al 2018;Ruysschaert and Hufty 2020). These factors have triggered a marked decline in the area's natural germplasm wealth, leading to a significant reduction in biodiversity.…”

Species discrimination power of ITS DNA barcoding on Tristaniopsis species on Bangka Island, Indonesia

“…Molecular characteristics based on DNA barcoding in Tristaniopsis have rarely been studied. Studies focused on Myrtacease have involved one or two species of this genus [15,27,28]. The previous studies that focused only on Tristaniopsis and applied three barcoding markers found that only the ITS marker supported Tristaniopsis as a monophyletic genus [17].…”