Molecular phylogenetic study of Hopea and Shorea (Dipterocarpaceae): Evidence from the trnL–trnF and internal transcribed spacer regions

Yulita, Kusumadewi Sri; Bayer, Randall J.; West, J. G.

doi:10.1111/j.1442-1984.2005.00136.x

Cited by 23 publications

(34 citation statements)

References 37 publications

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“…The interesting result in this study, H. dryobalanoides was grouped with S. johorensis and S. lepidota. Molecular analysis using trnL-trnF and ITS regions by Yulita et al (2005) observed that the molecular analysis has not been able to separate Shorea from Hopea into different monophyletic groups. Therefore, it is strongly suspected that the Hopea group has the same common ancestor with Shorea.…”

Section: Phylogenetic Tree Reconstruction Phylogenetic Analysis Of Rbmentioning

confidence: 99%

Phylogenetic analysis of Dipterocarpaceae in Ketambe Research Station, Gunung Leuser National Park (Sumatra, Indonesia) based on rbcL and matK genes

2018

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Harnelly E, Thomy Z, Fathiya N. 2018. Phylogenetic analysis of Dipterocarpaceae in Ketambe Research Station, GunungLeuser National Park (Sumatra, Indonesia) based on rbcL and matK genes. Biodiversitas 19: 1074-1080. Gunung Leuser National Parkhas several Research Stations. Ketambe is one of the Research Stations which is located in Aceh Tenggara district, Aceh province. Oneof the timber plants family which is abundant in Leuser Mountain is Dipterocarpaceae. However, the data of species and relationship ofDipterocarpaceae in Ketambe Research Station is lack and not available. The aim of the study is to analyze the phylogenetic ofDipterocarpaceae based on rbcL and matK gene in Ketambe Research Station. This research was carried out from July 2015 to August2016 in Ketambe Research Station and Forestry and Forest Genetics Laboratory of Molecular, Bogor Agricultural University. Themethod used quadrat sampling technique with purposive sampling and experimental laboratory consisting of DNA extraction, PCR,electrophoresis, and sequencing. The data analysis was done using BioEdit and MEGA6. The results showed that based onmorphological identification, there were five Dipterocarpaceae species found namely; Parashorea lucida, Shorea parvifolia, Shorealepidota, Shorea johorensis, and Hopea dryobalanoides. The phylogenetic tree based on rbcL gene showed that there were twomonophyletic groups, the first group was S. johorensis, S. lepidota, and H. dryobalanoides; and the second group consisted of S.parvifolia and P. lucida. The phylogenetic tree reconstruction based on matK gene showed that Shorea parvifolia and S. johorensis wereseparated in two different monophyletic groups.

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Section: Phylogenetic Tree Reconstruction Phylogenetic Analysis Of Rbmentioning

confidence: 99%

Phylogenetic analysis of Dipterocarpaceae in Ketambe Research Station, Gunung Leuser National Park (Sumatra, Indonesia) based on rbcL and matK genes

2018

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“…Phylogenetic analysis was carried out with the software PAUP* 4.0a146 (Swofford 2002) and MrBayes (Ronquist & Huelsenbeck 2003) using the maximum parsimony and Bayesian methods with Acorus calamus L. (Acoraceae) as outgroup, following Cabrera et al (2008); Cusimano et al (2011); Nauheimer et al (2012). The maximum parsimony trees were calculated based on chloroplast sequence data with gaps treated as missing data and heuristic search algorithms (Nei & Kumar 2000) with the following parameters: 1000 random addition sequence replicates, tree bisection reconnection (TBR) branch swapping, 10 parsimonious trees held after each replicate (Yulita et al 2005;Harrison & Langdale 2006). All characters were equally weighted and treated as unordered (Fitch 1971).…”

Section: Methodsmentioning

confidence: 99%

The phylogenetic position of Aglaodorum Schott (Araceae – Aroideae – Aglaonemateae)

Van¹,

Nguyen-Phi²,

Luu³

2020

TJB

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“…In addition, chloroplast DNA analysis of Dipterocarpaceae showed the difficulty of distinguishing between closely related species in the genera level primarily to indicate the species of Shorea. In fact, several types in the same tribe have identical sequences [29].…”

Section: B Blast Analysismentioning

confidence: 99%

Molecular Identification of Shorea Johorensis in Ketambe Research Station, Gunung Leuser National Park

Fathiya¹,

Harnelly²,

Thomy³

et al. 2018

J. Nat.

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Shorea johorensis is one of the red meranti plants in Ketambe Research Station, Gunung Leuser National Park, Aceh Tenggara. Currently, Shorea johorensis also is well known as a major source of valuable commercial timber. This research aimed to analyze the phylogenetic of Shorea johorensis based on chloroplast and nuclear DNA in Ketambe Research Station so that it can be known the relationship of Shorea johorensis with other species Dipterocarpaceae in GenBank database. The research was conducted from July 2015 to August 2016 in Ketambe Research Station and Forestry and Forest Genetics Laboratory of Molecular, Bogor Agricultural University. The method used quadrat sampling technique with purposive sampling and experimental laboratory that consisted of DNA extraction, PCR, electrophoresis, and sequencing. The data analysis was done using BioEdit, MEGA6, and BLAST. The results showed that the phylogenetic tree of Shorea johorensis based on the rbcL and matK showed that Shorea johorensis was closely related with some species Hopea; but the phylogenetic tree based on psbA-trnH, 5.8S rRNA, ITS2, and 28S rRNA showed that Shorea johorensis was closely related with Shorea robusta.Keywords: Chloroplast dna, Ketambe Research Station,Nuclear DNA, Shorea johorensis

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Molecular phylogenetic study of Hopea and Shorea (Dipterocarpaceae): Evidence from the trnL–trnF and internal transcribed spacer regions

Cited by 23 publications

References 37 publications

Phylogenetic analysis of Dipterocarpaceae in Ketambe Research Station, Gunung Leuser National Park (Sumatra, Indonesia) based on rbcL and matK genes

Phylogenetic analysis of Dipterocarpaceae in Ketambe Research Station, Gunung Leuser National Park (Sumatra, Indonesia) based on rbcL and matK genes

The phylogenetic position of Aglaodorum Schott (Araceae – Aroideae – Aglaonemateae)

Molecular Identification of Shorea Johorensis in Ketambe Research Station, Gunung Leuser National Park

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