A novel member of the mouse CMP-NeuAc: -N-acetylgalactosaminide ␣2,6-sialyltransferase (ST6GalNAc) subfamily, designated ST6GalNAc V, was identified by BLAST analysis of expressed sequence tags. The sequence of the longest cDNA clone of ST6GalNAc V encoded a type II membrane protein with 8 amino acids comprising the cytoplasmic domain, 21 amino acids comprising the transmembrane region, and 306 amino acids comprising the catalytic domain. The predicted amino acid sequence showed homology to the previously cloned ST6GalNAc III and IV, with common amino acid sequences in sialyl motifs L and S among these three enzymes. Eleven CAG repeats were found in the stem region. A fusion protein with protein A and extracts from L cells transfected with ST6GalNAc V in a expression vector showed enzyme activity of ␣2,6-sialyltransferase almost exclusively for GM1b, but not toward glycoproteins. Sialidase treatment and thin layer chromatography immunostaining revealed that the product was GD1␣. Northern blotting revealed that three transcripts of the gene were expressed specifically in brain tissues. It is concluded that this enzyme is involved in the synthesis of GD1␣ in the nervous tissues, and the CAG repeats may have implications in neurodegenerative diseases.Gangliosides are glycosphingolipids containing sialic acids in the carbohydrate moiety and have been considered critical to a wide variety of cellular events, such as cell-cell interaction, cell adhesion, mediation of invasion of vectors, and protein targeting (1, 2). The sialic acids in particular are thought important to the biological functions of gangliosides. In all the ganglioside structures so far defined, four main linkages of sialic acids are present, i.e. ␣2,3galactose (Gal), 1 ␣2,6Gal, ␣2,8sialic acid (Sia), and ␣2,6N-acetylgalactosamine (GalNAc).To biosynthesize sialyl compounds containing one or more sialic acids with the linkages described above, a number of sialyltransferases are needed. To date, more than 15 species of sialyltransferase genes have been isolated (3, 4); and six genes for ␣2,3Gal (ST3Gal), one gene for ␣2,6Gal (ST6Gal), five genes for ␣2,8Sia (ST8Sia), and four genes for ␣2,6GalNAc (ST6GalNAc) have been cloned as sialyltransferase genes involved in the synthesis of sialylated carbohydrates on glycoproteins and glycolipids (4). Some of them act on both glycoproteins and glycolipids, while others utilize either as an acceptor. The expression pattern of these genes varies, i.e. the expression of some genes is restricted to certain tissues or cells or to specific stages of development. However, many sialyltransferase genes are expressed in a ubiquitous manner.For the glycosyltransferase genes responsible for the synthesis of gangliosides, the majority of cDNAs have been isolated (5). Namely, sialyltransferases designated SAT I, SAT II, SAT III, SAT IV, and SAT V have been cloned and well characterized, although there is some ambiguity as to their identities and specificities (5). However, enzymes to extend the carbohydrate chains, or those t...