The AMLI gene on chromosome 21 is disrupted in the (8;21)(q22;q22) translocation associated with acute myelogenous leukemia and encodes a protein with a central 118-amino-acid domain with 69% homology to the Drosophila pair-rule gene, runt. We demonstrate that AML-1 is a DNA-binding protein which specifically interacts with a sequence belonging to the group of enhancer core motifs, TGT/cGGT. Electrophoretic mobility shift analysis of cell extracts identified two AML-1-containing protein-DNA complexes whose electrophoretic mobilities were slower than those of complexes formed with AML-1 produced in vitro. MLxing of in vitro-produced AML-1 with cell extracts prior to gel mobility shift analysis resulted in the formation of higher-order complexes. Deletion mutagenesis of AML-1 revealed that the runt homology domain mediates both sequence-specific DNA binding and protein-protein interactions. The hybrid product, AML-1/ETO, which results from the (8;21) translocation and retains the runt homology domain, both recognizes the AML-1 consensus sequence and interacts with other cellular proteins.The (8;21)(q22;q22) translocation is one of the most commonly observed chromosomal abnormalities in patients with acute myelogenous leukemia (AML) and involves the AMLI gene on chromosome 21 and the ETO (eight-twenty-one) gene on chromosome 8 (9,12,28,29,36). The fusion of these genes on the der(8) chromosome results in the production of a novel chimeric gene, AMLJ/ETO (9,29,40). A reciprocal translocation product from the der(21) chromosome has yet to be identified, and analysis of complex translocations suggests that the critical genetic rearrangement for cellular transformation is the der(8) (29, 37). A second, more rare, chromosomal abnormality occurring in patients with AML, t(3;21), also involves the AMLI locus (31,38). Thus, cumulative evidence suggests that the AMLI gene is a frequent target for chromosomal aberrations leading to leukemia.Northern (RNA) blot analysis demonstrates four distinct AML1 mRNAs, in a number of cell types, which appear to result from alternative splicing (9,28,29). An AMLl cDNA cloned by Miyoshi and coworkers (28) encodes a protein of 250 amino acids with a predicted molecular mass of 33 kDa which contains a consensus ATP binding sequence but no known DNA-binding motifs (9,28,29). However, AML1 does contain a region of 118 amino acids with 69% homology to the Drosophila pair-rule gene, runt (5, 13). Genetic evidence suggests that runt is an early-acting segmentation protein that regulates the expression of other segmentation genes such as hairy, even-skipped, and fushi tarazu (8,11,13,21,23,26). Additionally, runt may act as a positionspecific numerator element required for expression of the sex-determining gene, sex-lethal (7, 44). Unlike most segmentation genes, runt lacks an identifiable DNA-binding motif and has not been shown to bind DNA (13). Thus, its role in the regulation of gene expression remains unclear.DNA sequence analysis of AMLI/ETO chimeric cDNAs * Corresponding author.indicated t...