Mitochondrial genome sequences reveal the evolutionary relationship among different common carp varieties (Cyprinus carpino L.)

Liu, Xiangjiang; Ye, Xiangchen; Liang, Hongwei; Zhou, Lingling; Zhou, Xiaoyun; Zou, Guiwei; Hu, Guangfu

doi:10.1016/j.mgene.2018.11.001

Cited by 2 publications

(1 citation statement)

References 37 publications

Supporting

Mentioning

Contrasting

Order By: Relevance

“…For example, the origin and relationships among Hebao carp (HB), Xingguo Red carp (XG), Songpu carp (SP), Oujiang color carp (OUJ), and Koi carp (KOI) are controversial (Balon, 1995; Froufe et al, 2002; Wang and Li, 2004a; Wang and Li, 2004b). The previous studies indicated different phylogeny patterns using both nuclear genome (Xu et al, 2014) and mitochondrial genome sequence (Dong et al, 2015; Liu et al, 2019); however, due to limited number of samples, these results were not so solid for validation. Also, the genomic basis of local adaptation shaped by natural selection is still largely unknown.…”

Section: Introductionmentioning

confidence: 89%

Patterns of Geographical and Potential Adaptive Divergence in the Genome of the Common Carp (Cyprinus carpio)

Jiang

Zhao

et al. 2019

Front. Genet.

View full text Add to dashboard Cite

The common carp, Cyprinus carpio , is a cyprinid fish species cultured in Europe and Asia. It accounts for >70% of freshwater aquaculture production worldwide. We conducted a population genomics analysis on C. carpio using high-throughput SNP genotyping of 2,198 individuals from 14 populations worldwide to determine the genetic architecture of common carp populations and the genetic bases for environmental adaptation. Structure analyses including phylogeny and principal component analysis were also conducted, showing distinct geographical patterns in European and Asian populations. The linkage disequilibrium block average lengths of the 14 populations ranged from 3.94 kb to 36.67 kb. Genes within selective sweep regions were identified by genome scanning among the different populations, including gdf6a , bmpr1b , and opsin5 . Gene Ontology and KEGG enrichment analyses revealed potential trait-related loci and genes associated with body shape, scaling patterns, and skin color. This population genomics analysis may provide valuable clues for future genome-assisted breeding of C. carpio .

show abstract

Section: Introductionmentioning

confidence: 89%

Patterns of Geographical and Potential Adaptive Divergence in the Genome of the Common Carp (Cyprinus carpio)

Jiang

Zhao

et al. 2019

Front. Genet.

View full text Add to dashboard Cite

show abstract

Genetic variability of the initial herd of the intra-breed type of the Sarboyan carp (Cyprinus carpio L.) breed based on a fragment of the cytochrome oxidase I gene of mitochondrial DNA

Moruzi,

Eliseeva,

Razoqov

et al. 2023

Fisheries

View full text Add to dashboard Cite

In the modern study of evolutionary and taxonomic relationships of fish, the mitochondrial genome is used because of its small size and high mutation rate compared to the nuclear genome. mtDNA research helps to identify geographical and genetic patterns, as well as the origin of species, breeds and varieties. In this work, the genetic diversity of the herd of the northern type Sarboyan carp was studied using the COX1 fragment of mitochondrial DNA, and phylogenetic relationships between modern breeds, subspecies and species of the genus Cyprinus were analyzed. The analyzed haplotypes of Sarboyan carp bred in the Moshkovsky district on the farm of ECO-PARK LLC revealed relatively low indicators of genetic polymorphism. Phylogenetic analysis conducted on the basis of its own haplotypes and haplotypes taken from the NCBI international database suggests that the Sarboyan carp is a deeply hybrid grouping, which confirms the known data on the origin of this breed. The study of the median haplotype network showed that the haplotypes of carp and wild carp form related haplogroups through one common haplotype. The Sarboyan carp is represented by three haplotypes, 75% of which belong to the star-shaped structure (H1), and the remaining 25% are represented by various breeds of carp and carp from both Eurasia and North America.

show abstract

Mitochondrial genome sequences reveal the evolutionary relationship among different common carp varieties (Cyprinus carpino L.)

Cited by 2 publications

References 37 publications

Patterns of Geographical and Potential Adaptive Divergence in the Genome of the Common Carp (Cyprinus carpio)

Patterns of Geographical and Potential Adaptive Divergence in the Genome of the Common Carp (Cyprinus carpio)

Genetic variability of the initial herd of the intra-breed type of the Sarboyan carp (Cyprinus carpio L.) breed based on a fragment of the cytochrome oxidase I gene of mitochondrial DNA

Contact Info

Product

Resources

About