2022
DOI: 10.1038/s41524-022-00878-5
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Microstructure segmentation with deep learning encoders pre-trained on a large microscopy dataset

Abstract: This study examined the improvement of microscopy segmentation intersection over union accuracy by transfer learning from a large dataset of microscopy images called MicroNet. Many neural network encoder architectures were trained on over 100,000 labeled microscopy images from 54 material classes. These pre-trained encoders were then embedded into multiple segmentation architectures including UNet and DeepLabV3+ to evaluate segmentation performance on created benchmark microscopy datasets. Compared to ImageNet… Show more

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Cited by 36 publications
(10 citation statements)
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“…Thus, depending on the respective application, a compromise must be found, especially since the creation of a training dataset is the most time-consuming part of the implementation. Furthermore, the model could be optimized by pre-training the encoder part of the UNet specifically on optical microstructural images (Stuckner et al, 2022). In this way the weights of the encoder can be optimized for extracting only the most relevant features from microscopic images, instead of using the ImageNet weights, as in this showcase.…”
Section: Discussionmentioning
confidence: 99%
“…Thus, depending on the respective application, a compromise must be found, especially since the creation of a training dataset is the most time-consuming part of the implementation. Furthermore, the model could be optimized by pre-training the encoder part of the UNet specifically on optical microstructural images (Stuckner et al, 2022). In this way the weights of the encoder can be optimized for extracting only the most relevant features from microscopic images, instead of using the ImageNet weights, as in this showcase.…”
Section: Discussionmentioning
confidence: 99%
“…A straightforward representation is pixel or voxel data for which convolutional neural networks (CNN) often provide appropriate inductive bias. Meanwhile, these models are well established in materials science, especially for tasks such as segmentation and prediction of damage and crystallographic phases [2][3][4][5][6] . However, for predicting microstructural fatigue damage sites, where high-dimensional data is necessary to capture the interactions between various influence factors, pixel/voxel-based approaches are often infeasible due to their pronounced computational demand.…”
Section: Introductionmentioning
confidence: 99%
“…A straightforward representation is pixel or voxel data for which convolutional neural networks (CNN) often provide appropriate inductive bias. Meanwhile, these models are well established in materials science, especially for tasks such as segmentation and prediction of damage and crystallographic phases [2][3][4][5][6] . However, for predicting microstructural fatigue damage sites, where high-dimensional data is necessary to capture the interactions between various influence factors, pixel/voxel-based approaches are often infeasible due to their pronounced computational demand.…”
Section: Introductionmentioning
confidence: 99%