“…Based on the OTU results as described in Section 2.5, the alpha diversity and beta diversity were compared between mesophilic and thermophilic digestion. The Shannon index and principal component analysis (PCA) were the most recognized indicators to evaluate the alpha and beta diversity, respectively [37,38]. Table 3 showed the Shannon variation of M1, M2, T1, T2, T3, R1, R2, T3, T4 and T5 under different operation stages.…”