Fluorescence in situ hybridization (FISH) and rRNA slot blot hybridization with 16S rRNA-targeted oligonucleotide probes were used to investigate the phylogenetic composition of a marine Arctic sediment (Svalbard). FISH resulted in the detection of a large fraction of microbes living in the top 5 cm of the sediment. Up to 65.4% ؎ 7.5% of total DAPI (4,6-diamidino-2-phenylindole) cell counts hybridized to the bacterial probe EUB338, and up to 4.9% ؎ 1.5% hybridized to the archaeal probe ARCH915. Besides ␦-proteobacterial sulfate-reducing bacteria (up to 16% 52) members of the Cytophaga-Flavobacterium cluster were the most abundant group detected in this sediment, accounting for up to 12.8% of total DAPI cell counts and up to 6.1% of prokaryotic rRNA. Furthermore, members of the order Planctomycetales accounted for up to 3.9% of total cell counts. In accordance with previous studies, these findings support the hypothesis that these bacterial groups are not simply settling with organic matter from the pelagic zone but are indigenous to the anoxic zones of marine sediments. Members of the ␥-proteobacteria also constituted a significant fraction in this sediment (6.1% ؎ 2.5% of total cell counts, 14.4% ؎ 3.6% of prokaryotic rRNA). A new probe (GAM660) specific for sequences affiliated with free-living or endosymbiotic sulfur-oxidizing bacteria was developed. A significant number of cells was detected by this probe (2.1% ؎ 0.7% of total DAPI cell counts, 13.2% ؎ 4.6% of prokaryotic rRNA), showing no clear zonation along the vertical profile. Gram-positive bacteria and the -proteobacteria were near the detection limit in all sediments.Knowledge of the microbial diversity of marine pelagic and benthic communities has been greatly extended recently by molecular studies based on the analysis of 16S rDNA sequences (see, for example, references 9, 10, 20, 43, 44, 48, 50, 52, and 67). Numerous new 16S rDNA sequences have been retrieved both from marine sediments and from the water column, indicating that the vast majority of species has not been cultivated yet. Several studies using the cultivation-independent approach of 16S rDNA cloning have helped to elucidate common features within the microbial communities of specific habitats such as marine benthic environments (10,35,36,52,67). Furthermore, they have provided additional sequence information for the design and evaluation of nucleic acid probes for the identification and quantification of distinct bacterial populations.While microbial diversity can be readily studied by PCRbased 16S rDNA cloning, community structure cannot be deduced from cloning studies (3) due to potential biases introduced during DNA retrieval and amplification (17,53,65). For reliable characterization of community structure, quantitative methods such as fluorescence in situ hybridization (FISH) or rRNA slot blot hybridization are more suitable (3). To date, a number of studies have been performed using either of these two methods to quantify different groups in marine sediments (15,37,38,51,(57)(5...