sensors to lipid is contrary to the classical expectation that the dielectric contrast between the membrane hydrocarbon core and water presents an insurmountable energetic penalty to burial of electric charges. Nevertheless, recent experiments have shown that a helix with the sequence of KvAP S4 can be inserted across the endoplasmic reticulum membrane. To reconcile this result with the classical energetics argument, we have carried out a molecular dynamics simulation of an isolated TM S4 helix in a lipid bilayer. The simulation reveals a stabilizing hydrogen-bonded network of water and lipid phosphates around the arginines that reduces the effective thickness of the bilayer hydrocarbon core to Ϸ10 Å in the vicinity of the helix. It suggests that bilayer phospholipids can adapt locally to strongly perturbing protein elements, causing the phospholipids to become a structural extension of the protein.voltage-gated potassium channels ͉ lipid bilayer structure ͉ membrane electrostatics ͉ molecular dynamics simulation ͉ membrane proteins V oltage-sensitive ion channels (reviewed in ref. 1), which probably exist in all life forms (2), control the flow ionic currents down transmembrane (TM) electrochemical gradients in response to changes in membrane potential. They do this by opening and closing in response to changes in TM potential as a result of the motion of voltage-sensor domains (3). Voltagegated potassium (Kv) channels, perhaps the most intensely studied family of voltage-sensitive channels, are typically homotetramers assembled from monomers that have six TM helices (S1-S6) with a pore domain between S5 and S6. The principal voltage-sensing component is the S4 helix. Although rich in hydrophobic residues, it includes four or more positively charged amino acids, most commonly arginine, that cause S4 to respond to changes in membrane potential.The mechanistic details of the S4 response in Kv channels is a matter of considerable debate (4-8). The focus of the discussion is the so-called paddle model (9), which derives from the high-resolution structure (10) of the KvAP K ϩ channel from the archaebacterium Aeropyrum pernix (11), and more recently the structure of a mammalian voltage-dependent K ϩ channel (12, 13). This model posits that the four voltage paddles of the homotetramer, comprised of part of S3 (S3b) and S4, move within the membrane bilayer in response to TM voltage changes. The alternative view is that S4 moves inside water-filled canaliculi hidden from the bilayer by other parts of the channel protein (14). Although experimental studies show that synthetic peptides related to the S4 voltage sensor readily adopt surfacebound configurations with model membranes (15, 16), a TM configuration is contrary to the classical expectation that the dielectric contrast between the membrane hydrocarbon core and water presents an insurmountable energetic penalty to burial of electric charges (17,18).A key question is thus whether an isolated S4 segment can exist as a TM helix in the absence of the rest of the protei...