Mapping Microbial Capacities for Bioremediation: Genes to Genomics

Lee, Jung-Kul; Kalia, Vipin Chandra

doi:10.1007/s12088-019-00842-w

Cited by 10 publications

(1 citation statement)

References 159 publications

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“…For instance, the effect of global warming on a marine microbial community cannot be easily tested in situ. Moreover, community-level understanding and the optimization of bioprocesses can be facilitated by using the synthetic community model, and these optimized bioprocesses have a wide range of utilization, such as in bioremediation [ 103 ]. It is due to these advances that the true value of marine microbiomes is just beginning to be presented.…”

Section: Bottlenecks and Future Directionsmentioning

confidence: 99%

The Landscape of Global Ocean Microbiome: From Bacterioplankton to Biofilms

Shu

Zhang

et al. 2023

IJMS

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The development of metagenomics has opened up a new era in the study of marine microbiota, which play important roles in biogeochemical cycles. In recent years, the global ocean sampling expeditions have spurred this research field toward a deeper understanding of the microbial diversities and functions spanning various lifestyles, planktonic (free-living) or sessile (biofilm-associated). In this review, we deliver a comprehensive summary of marine microbiome datasets generated in global ocean expeditions conducted over the last 20 years, including the Sorcerer II GOS Expedition, the Tara Oceans project, the bioGEOTRACES project, the Micro B3 project, the Bio-GO-SHIP project, and the Marine Biofilms. These datasets have revealed unprecedented insights into the microscopic life in our oceans and led to the publication of world-leading research. We also note the progress of metatranscriptomics and metaproteomics, which are confined to local marine microbiota. Furthermore, approaches to transforming the global ocean microbiome datasets are highlighted, and the state-of-the-art techniques that can be combined with data analyses, which can present fresh perspectives on marine molecular ecology and microbiology, are proposed.

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Section: Bottlenecks and Future Directionsmentioning

confidence: 99%