Pesticide Bioremediation: OMICs Technologies for Understanding the Processes

Rodríguez, A.; Castrejón-Godínez, María Luisa; Sánchez-Salinas, Enrique; Mussali-Galante, Patricia; Tovar-Sánchez, Efraı́n; Ortiz-Hernández, Ma. Laura

doi:10.1007/978-3-030-97000-0_8

Cited by 9 publications

(3 citation statements)

References 254 publications

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“…The intricate process of microbial degradation relies on the microbial diversity in individual habitats and is greatly influenced by nutrient cycles and stress response processes ( GAngola et al., 2022 ; Rodríguez et al., 2022 ). In order to determine which chemical variables and microbial diversity metrics can predict chemical degradation, it is necessary to comprehend the relationship between the composition of the microbial community, its potential for degradation, growth regulators, resistance, and metabolic capabilities of microbes to deal with xenobiotics.…”

Section: Innovative Bioremediation Techniques and Future Prospectsmentioning

confidence: 99%

Editorial: Potential of the plant rhizomicrobiome for bioremediation of contaminants in agroecosystems

Bhandari,

Gangola,

Bhatt

et al. 2024

Front. Plant Sci.

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Section: Innovative Bioremediation Techniques and Future Prospectsmentioning

confidence: 99%

Editorial: Potential of the plant rhizomicrobiome for bioremediation of contaminants in agroecosystems

Bhandari,

Gangola,

Bhatt

et al. 2024

Front. Plant Sci.

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“…For genotypic fingerprinting, a variety of PCR-based techniques are available, including amplified fragment length polymorphisms (AFLP), amplified ribosomal DNA restriction analysis (ARDRA), automated ribosomal intergenic spacer analysis (ARISA), terminal-restriction fragment length polymorphism (T-RFLP), randomly amplified polymorphic DNA analysis (RAPD), single strand conformation polymorphism (SSCP), and length heterogeneity [139]. When it comes to studying soil microbial communities, RAPD can be utilized for assessing inherently related bacterial species, constructing functional structural models, and generating genetic fingerprints [140]. In microbial communities, LH-PCR may be used to detect natural length variations of various SSU rRNA genes.…”

Section: Genomicsmentioning

confidence: 99%

Recent Strategies for Bioremediation of Emerging Pollutants: A Review for a Green and Sustainable Environment

Bala

Garg

Thirumalesh

et al. 2022

Toxics

225

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Environmental pollution brought on by xenobiotics and other related recalcitrant compounds have recently been identified as a major risk to both human health and the natural environment. Due to their toxicity and non-biodegradability, a wide range of pollutants, such as heavy metals, polychlorinated biphenyls, plastics, and various agrochemicals are present in the environment. Bioremediation is an effective cleaning technique for removing toxic waste from polluted environments that is gaining popularity. Various microorganisms, including aerobes and anaerobes, are used in bioremediation to treat contaminated sites. Microorganisms play a major role in bioremediation, given that it is a process in which hazardous wastes and pollutants are eliminated, degraded, detoxified, and immobilized. Pollutants are degraded and converted to less toxic forms, which is a primary goal of bioremediation. Ex situ or in situ bioremediation can be used, depending on a variety of factors, such as cost, pollutant types, and concentration. As a result, a suitable bioremediation method has been chosen. This review focuses on the most recent developments in bioremediation techniques, how microorganisms break down different pollutants, and what the future holds for bioremediation in order to reduce the amount of pollution in the world.

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“…Omics data can support the conservation of ecosystems and the sustainable use of marine resources (for example Bowser et al, 2020;Turunen et al, 2021), as well as the monitoring of wild animal populations such as fish (Andruszkiewicz et al, 2017) or mammals (Suarez-Bregua et al, 2022). In addition, omics data can be integrated into ecosystem models to develop innovative investigations in food security (for example Grützke et al, 2019;Sequino et al, 2022), biodiscovery (for example Mahapatra et al, 2020;Shaaban et al, 2022), novel treatments in biofuels (Sartaj et al, 2022) and bioremediation (Rodrıǵuez et al, 2022), and other services such as disease detection in the environment (Wurtzer et al, 2022) or clinical diagnostics (Forbes et al, 2017). In the last decade, omics methods have matured into viable solutions to support efficient biodiversity observation from microbes to whales, reorienting our understanding of ecology and evolution, as well as the ways humans are embedded in the physical world (Canonico et al, 2019;Rodrıǵuez-Ezpeleta et al, 2021).…”

Section: The Role Of Omics In Marine Biological Observationmentioning

confidence: 99%

European marine omics biodiversity observation network: a strategic outline for the implementation of omics approaches in ocean observation

Santi,

Beluche,

Beraud

et al. 2023

Front. Mar. Sci.

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Marine ecosystems, ranging from coastal seas and wetlands to the open ocean, accommodate a wealth of biological diversity from small microorganisms to large mammals. This biodiversity and its associated ecosystem function occurs across complex spatial and temporal scales and is not yet fully understood. Given the wide range of external pressures on the marine environment, this knowledge is crucial for enabling effective conservation measures and defining the limits of sustainable use. The development and application of omics-based approaches to biodiversity research has helped overcome hurdles, such as allowing the previously hidden community of microbial life to be identified, thereby enabling a holistic view of an entire ecosystem’s biodiversity and functioning. The potential of omics-based approaches for marine ecosystems observation is enormous and their added value to ecosystem monitoring, management, and conservation is widely acknowledged. Despite these encouraging prospects, most omics-based studies are short-termed and typically cover only small spatial scales which therefore fail to include the full spatio-temporal complexity and dynamics of the system. To date, few attempts have been made to establish standardised, coordinated, broad scaled, and long-term omics observation networks. Here we outline the creation of an omics-based marine observation network at the European scale, the European Marine Omics Biodiversity Observation Network (EMO BON). We illustrate how linking multiple existing individual observation efforts increases the observational power in large-scale assessments of status and change in biodiversity in the oceans. Such large-scale observation efforts have the added value of cross-border cooperation, are characterised by shared costs through economies of scale, and produce structured, comparable data. The key components required to compile reference environmental datasets and how these should be linked are major challenges that we address.

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Pesticide Bioremediation: OMICs Technologies for Understanding the Processes

Cited by 9 publications

References 254 publications

Editorial: Potential of the plant rhizomicrobiome for bioremediation of contaminants in agroecosystems

Editorial: Potential of the plant rhizomicrobiome for bioremediation of contaminants in agroecosystems

Recent Strategies for Bioremediation of Emerging Pollutants: A Review for a Green and Sustainable Environment

European marine omics biodiversity observation network: a strategic outline for the implementation of omics approaches in ocean observation

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