Patterns of kinship among individuals in different groups have been rarely examined in animals. Two closest living relatives of humans, bonobos and chimpanzees share many characteristics of social systems including male philopatry, whereas one major difference between the two species is the nature of intergroup relationship. Intergroup relationship is basically antagonistic and males sometimes kill individuals of other groups in chimpanzees, whereas it is much more moderate in bonobos and copulations between individuals of different groups are often observed during intergroup encounters. Such behavioural differences may facilitate more frequent between-group male gene flow and greater between-group differentiation in male kinship in bonobos than in chimpanzees. Here we compared differences between average relatedness among males within groups and that among males of neighbouring groups, and between-group male genetic distance between bonobos and chimpanzees. Contrary to expectation, the differences between average relatedness among males within groups and that among males of neighbouring groups were significantly greater in bonobos than in chimpanzees. There were no significant differences in autosomal and Y-chromosomal between-group male genetic distance between the two species. Our results showed that intergroup male kinship is similarly or more differentiated in bonobos than in chimpanzees. Kinship is one of key factors to affect affinity among animals 1. It has been clarified that reciprocity and cooperation in animals have been attributed to kin selection, a process whereby individuals cooperate with relatives and gain indirect fitness benefits through the reproduction of kin 2. Researchers have clarified that kin selection can occur within social groups of each species. However, patterns of kinship among individuals in different groups have been rarely examined in especially large mammalian species (e.g. chimpanzee 3 , western lowland gorilla 4), since it is tough to examine them in the wild. For a better understanding of the influences of kinship on social interactions in animals, patterns of kinship among individuals in different groups should be investigated with references about patterns of social interactions among them. Comparisons between bonobos and chimpanzees are effective in examining the relationships between intergroup interactions and kinship among individuals in different groups. These two species share many characteristics of their social system including male philopatry, multi-male/multi-female group composition, and fission-fusion dynamics 5-7. Despite these similarities, the nature of intergroup relationship largely differs between the two species. Intergroup relationship in chimpanzees is basically antagonistic and male chimpanzees sometimes make lethal coalitionary attacks and kill males of different groups 8-11. Contrary to chimpanzees, bonobos show much more moderate intergroup relationships. Although intergroup male-male relationships are antagonistic, male bonobos rarely show lethal...