Oxygenase reactivity toward selective partial oxidation of CH 4 to CH 3 OH requires an atomic oxygen-radical bound to metal (M−O • : oxyl intermediate) that is capable of abstracting an H atom from the significantly strong C−H bond in CH 4 . Because such a reaction is frequently observed in metal-doped zeolites, it has been recognized that the zeolite provides an environment that stabilizes the M−O • intermediate. However, no experimental data of M−O • have so far been discovered in the zeolite; thus, little is known about the correlation among the state of M−O • , its reactivity for CH 4 , and the nature of the zeolite environment. Here, we report a combined spectroscopic and computational study of the room-temperature activation of CH 4 over Zn II −O • in the MFI zeolite. One Zn II −O • species does perform H-abstraction from CH 4 at room temperature. The resultant CH 3• species reacts with the other Zn II −O • site to form the Zn II −OCH 3 species. The H 2 Oassisted extraction of surface methoxide yields 29 μmol g −1 of CH 3 OH with a 94% selectivity. The quantum mechanics (QM)/ molecular mechanics (MM) calculation determined the central step as the oxyl-mediated hydrogen atom transfer which requires an activation energy of only 10 kJ mol −1 . On the basis of the findings in gas-phase experiments regarding the CH 4 activation by the free [M−O • ] + species, the remarkable H-abstraction reactivity of the Zn II −O • species in zeolites was totally rationalized. Additionally, the experimentally validated QM/MM calculation revealed that the zeolite lattice has potential as the ligand to enhance the polarization of the M−O • bond and thereby enables to create effectively the highly reactive M−O • bond required for low-temperature activation of CH 4 . The present study proposes that tuning of the polarization effect of the anchoring site over heterogeneous catalysts is the valuable way to create the oxyl-based functionality on the heterogeneous catalyst.