The diversity of clinical (n ؍ 92) and oral and digestive commensal (n ؍ 120) isolates of Streptococcus salivarius was analyzed by multilocus sequence typing (MLST). No clustering of clinical or commensal strains can be observed in the phylogenetic tree. Selected strains (92 clinical and 46 commensal strains) were then examined for their susceptibilities to tetracyclines, macrolides, lincosamides, aminoglycosides, and phenicol antibiotics. The presence of resistance genes tet(M), tet(O), erm(A), erm(B), mef(A/ E), and catQ and associated genetic elements was investigated by PCR, as was the genetic linkage of resistance genes. High rates of erythromycin and tetracycline resistance were observed among the strains. Clinical strains displayed either the erm(B) (macrolide-lincosamide-streptogramin B [MLS B ] phenotype) or mef(A/E) (M phenotype) resistance determinant, whereas almost all the commensal strains harbored the mef(A/E) resistance gene, carried by a macrolide efflux genetic assembly (MEGA) element. A genetic linkage between a macrolide resistance gene and genes of Tn916 was detected in 23 clinical strains and 5 commensal strains, with a predominance of Tn3872 elements (n ؍ 13), followed by Tn6002 (n ؍ 11) and Tn2009 (n ؍ 4) elements. Four strains harboring a mef(A/E) gene were also resistant to chloramphenicol and carried a catQ gene. Sequencing of the genome of one of these strains revealed that these genes colocalized on an IQ-like element, as already described for other viridans group streptococci. ICESt3-related elements were also detected in half of the isolates. This work highlights the potential role of S. salivarius in the spread of antibiotic resistance genes both in the oral sphere and in the gut.
Streptococcus salivarius is a Gram-positive commensal bacterium that is a major bacterial constituent of saliva and of biofilms found on the human tongue dorsum (1). It belongs to the early microbial community that colonizes the oral cavities of newborns (2) and persists in the adult oral flora (3). This species is considered to contribute to oral health by preventing the colonization of mucosal surfaces with pathogens involved in upper respiratory tract infections (4). For instance, S. salivarius strains have been reported to inhibit biofilm formation by Streptococcus pyogenes (5) and Streptococcus mutans (6) as well as adherence by Candida albicans (7). S. salivarius is also commonly detected as an inhabitant of the gastrointestinal tracts of healthy humans and has been described as a typical small intestine commensal species (8). However, some strains have been associated with opportunistic infections: a growing number of meningitis cases (9, 10), several cases of endocarditis (11), bacteremia in immunocompromised patients (12, 13), and invasion of the guts of patients with liver cirrhosis (14).Macrolides and tetracyclines are commonly used for the treatment of streptococcal infections, but high rates of resistance to these antibiotics have been observed among pathogenic and commensal strept...