After 40 years of commercial availability, heparin is still one of the most interesting pharmaceuticals in use today. It is one of the few agents that has continued to provoke intense interest after many years of use. The biologic activities, and the concepts of the chemical structure have been constantly changing over the years. Heparin is no longer thought of as a simple compound delaying the coagulation of blood by whatever means. It does have multiple and varied effects. 17 Commercial heparin today, as in the past, is not a compound and does not have a uniform molecular structure. It is a mixture of polymers of varying size and slight differences exist between the polymers and in the individual sugars within a particular polymer grouping. 18 A semiofficial designation says that it is composed of alternating derivatives of D-glucosamine (N-sulfated or N-acetylated) and uronic acid (L-iduronic acid with varying sulfate or D-glucuronic acid) joined by glycosidic linkages. Molecular weights can range from 1000 to 50,000 daltons. Structural differences comprise degree of sulfation and placement of sulfate groups, whether they be ester sulfate (o-sulfate) or amine sulfate (n-sulfate), and also the presence or absence of acetyl groups, aside from the chain length size.Being a mixture of active and so-called inactive principles, heparin has always been fractionated during the extraction and purification stages. These procedures are carried out not just to remove unwanted protein and peptide contaminants, but to enhance activity. The fractionations are primarily separations through charge, such as a gradient of differing salt elution concentrations, either from quaternary ammonium compound complexes or from ion exchange resins. This is the most common method of carrying out separations. 4 However, charge density separation cannot be considered a molecular sizing operation. The highest charged material can have the highest anticoagulant potency, but there are differences in activities using different types of assays. These activities can take place within a particular molecular weight species. 10 Nonaqueous water miscible solvent separations are usually carried out in the final steps of a purification. These separations, to a great degree, can be considered molecular weight separations, for varying amounts of solvent are added for individual isolations to obtain different activities. There can be as much as four precipitations from a mixture using different volumes of solvent. Some heparin-like compounds can be coprecipitated, also. 5 Gel permeation separations have rarely been carried out on a commercial scale. This procedure, performed properly, does give a true molecular weight separation. 2,11 Unfortunately to a degree, the fractionations that had taken place in the past, and even today, were almost always aimed at gaining a higher anticoagulant activity based on compendial requirements and the global assays being used. Little attention was paid to other effects of the heparins, or of the extraneous factors, with t...