1. Chironomids and chaoborids were collected across eastern Australia and Tasmania in dune, glacial, sinkhole and maar lakes. Based on sampling exuviae from these relatively undisturbed freshwater lakes, we observed that species richness on the Australian continent was substantially greater than previously reported, and challenge the longstanding view that chironomid species richness is depauperate in Australian lakes, compared with the northern hemisphere. 2. While chironomid species richness was equivalent across the four geographical regions sampled (tropical northern Queensland, Fraser Island, south-eastern mainland Australia and Tasmania), there were only five 'cosmopolitan' species found across all regions. In general, species distributions were more closely associated with geographical region than with lake characteristics, and there were species assemblage differences among biogeographical regions. More than half of the 134 identified species were restricted to a single geographical region. Overall, Tasmanian lakes had the highest proportion of locally endemic species. 3. Latitude and altitude more strongly influenced species assemblages than did lake chemistry, although species richness sometimes varied among lake geomorphic types within a region.