The complete amino acid sequence of the a2 heavy chain of a human IgA2 immunoglobulin of the A2m(2) allotype has been determined and is compared to the sequence of the al chain of the human IgAl subclass. The characteristic differences between the al and a2 chains are greatest in the hinge region and in the location and number of the oligosaccharides. Apart from the duplication in the hinge region of al and the deletion in a2, there are 23 amino acid exchanges in the constant (C) regions of the two chains. Accepted mutations are related to the surface accessibility of the residues and the proximity of carbohydrate. The results indicate that human IgA and IgG subclasses arose late in evolution and reflect similar mutational pressures.IgA, the characteristic antibody of secretory fluids and the second most abundant of the five classes of human immunoglobulins, normally exists as two well-defined subclasses, IgAl and IgA2, that can be differentiated both chemically and antigenically (1, 2). By serological methods, a genetically controlled polymorphism (allotypy) has been identified in the IgA2 subclass. The two allotypes of IgA2 have been given various confusing designations but the recommended notation is now A2m(1) and A2m(2). These terms correspond to the notation Am2(+) and Am2(-) used earlier by us (3) and by others. Recently, an isoallotype of human IgA proteins, designated nA2m(2), was identified serologically by van Loghem et al. (4). Our objectives have been to determine the primary structure of human IgAl and IgA2 proteins, including the complete amino acid sequence of their heavy chains (al and a2, respectively), to establish the location and kinds of oligosaccharides, to identify the genetically determined differences in structure of the allotypes, and to relate these to the biological function, three-dimensional structure, and evolution of the IgA class of molecules. We have previously reported the complete covalent structure of an IgAl myeloma protein (designated Bur) (5), the comparison of the Fc structure of human IgA, IgG, IgM, and IgE (6), and the location and nature of the oligosaccharides in human al and a2 heavy chains as well as some amino acid substitutions characteristic of the subclasses and allotype of a chains (7).We report here the complete amino acid sequence of the a2 heavy chain of a human A2m(2) myeloma protein (designated But). The frequency of this allotype is highest in Africa, is less in Australia and Asia, and is lowest in Europe (2). Subclasses and allotypes are also known for human IgG, but only partial sequences of the -y chains of the four human subclasses of IgG have been published; they have been summarized by Beale and Feinstein (8). Overall, the al chain and the a2 chain of the A2m(2) allotype are remarkably similar; the major differences are: (i) the partial duplication in the al hinge and the deletion in the a2 hinge already described (7, 9); (ii) the number and location of the oligosaccharides (7); and (iii) 23 amino acid substitutions outside the hinge regio...