Isolation, Propagation and Genotyping of Human Rotaviruses Circulating among Children with Gastroenteritis in Two Egyptian University Hospitals

Hopo²,

et al. 2023

Zoonoses

Acute gastroenteritis (AGE) induced by rotavirus has been a major disease burden in Egypt since 1981 when rotavirus was first reported in humans and calves. Genome segmentation facilitates the emergence of new virus serotypes, which allows reassortment during mixed infections, and is a characteristic feature of the family Reoviridae to which rotavirus belongs. The rotavirus genome involves 11 double-stranded RNA gene segments encoding 6 non-structural (NSP1–6) and 6 structural (VP1–4, VP6, VP7) proteins. Rotavirus A has a zoonotic potential associated with diarrhea. The primary strategy for prevention and control of bovine and human rotavirus infections is vaccination; however, routine rotavirus vaccination has not been implemented in the National Immunization Program. We evaluated studies published over the last 30 years that pertained to the epidemiology of circulating rotavirus genotypes among children, calves, and environmental samples in Egypt. The analysis revealed a rotavirus prevalence of 15%–100%, with diarrhea occurring throughout the year, but generally peaking during the cold months. G1 was the predominant genotype in children, followed by G2, G3, G4, G8, G9, and G12 throughout the study duration. Mixed infections were also detected. G6 was the predominant genotype in calves, followed by G10. There are still gaps in knowledge regarding molecular data of rotavirus infections in humans, animals, and environmental samples in Egypt, as well as the zoonotic potential of rotavirus disease. Therefore, it is critical to continue rotavirus surveillance in Egypt to further understand the epidemiology of rotavirus infections and the emerging new genotypes.

Section: G1-g4 Genotypessupporting

confidence: 58%

Section: G1-g4 Genotypesmentioning

confidence: 99%

See 1 more Smart Citation

The Epidemiology of Circulating Rotavirus Associated with Diarrhea in Egyptian Kids and Calves: A Review

Hopo²,

et al. 2023

Zoonoses

J.Umm Al-Qura Univ. Appll. Sci.

Occurrence of enteroviruses, noroviruses, rotaviruses, and adenoviruses in a wastewater treatment plant

Soltane

Allayeh

2023

The main objective of this study is to evaluate the quality of wastewater by molecular identification of enteroviruses, rotaviruses, and adenoviruses in wastewater samples collected from the ElSerw wastewater treatment facility in Damietta Governorate, Egypt. An additional objective is to assess the usefulness of these viruses as markers of viral reduction during wastewater treatment. A treatment facility's inflow and discharge were sampled 48 times. The incidence of enteric viruses was found in 29 wastewater samples (60.4%). 6.25% (3/48), 0% (0/48), 37.5% (18/48), and 20.8% (10/48) of the samples tested positive for enteroviruses (EVs), noroviruses, rotaviruses, and adenoviruses, respectively. Co-infections with two or more viruses were found in 10.4% (5/48) and 2% (1/48) of all cases, respectively. The viral burden in the wastewater treatment plant's discharge effluents dropped non-significantly when compared to intake samples. According to our findings, rotaviruses and adenoviruses have been found in 10 outlet effluent samples. The removal rates for enteroviruses, rotaviruses and adenoviruses were 39%, 61.5% and 33.3%, respectively. As a result of their high frequency and lower removal rates, both rotaviruses and adenoviruses were deemed an appropriate indicator of human enteric viral reduction during the wastewater treatment process.

Egyptian Pharmaceutical Journal

Prevalence and molecular characterization of rotavirus strains circulating among children with gastroenteritis in Egypt

Shaheen,

Abd Al-Daim,

Ahmed

et al. 2024

Background and objectives Human rotavirus (RV) is the main cause of diarrheal disease among children younger than 5 years old, worldwide. The aim of the current study was to investigate the prevalence of RV infections and the genotype distribution of RV in Egypt. Materials and methods A total of 642 fecal samples were collected from children younger than 5 years of age, suffering from acute diarrhea and attending ten regional public hospitals (n=585) and five private clinics (n=57) located in 6 Egyptian cities between February and June 2021. All samples were screened by immunochromatographic assay to determine RV prevalence. Then RV-positive samples were further subjected for detection of G (VP7) and P (VP4) genotypes by seminested multiplex real-time reverse transcriptase-polymerase chain reaction (RT-PCR). Results Out of the 642 children, RV was detected in 268 (41.7%). Inpatients were more likely to be RV-positive (43.2%) than outpatients (26.3%) and most of the positive samples 215/268 (80.2%) were found in children less than 1 year of age. RV infections were more common in males than females (65.3% vs. 34.7%). The VP7 predominant G type was G3 (31.3%), followed by G8 (20.5%), G1 (7%), mixed G infections (6.3%), G2 (1.9%), G9 (1.9%), G4 (1.5%), and G10 (0.4%). The VP4 predominant P type was P[8] (53.7%), followed by P[4] (16%), P[6] (9.3%), P[9] (6.3%), P[11] (4.5%), P[10] (2.6%), and mixed P infections (1.9%). The dominant VP7/VP4 combination was G3P[8] (24.2%), G8P[8] (10%), G8P[4] (5.2%), G1P[8] (4.5%), G8P[6] (3.3%), and G3P[4] (2.2%). Several other combinations were also identified with detection rates less than 2% of positive RV samples. Mixed genotype combinations and partially typed strains were detected in 31.7% and 7.5%, respectively. Conclusion This study highlights the necessity for continuous epidemiology and surveillance of RVA infection to improve our control and management of RVA infection. Furthermore, due to the lack of a national anti-RV vaccination program, RV remains the main causative agent for acute gastroenteritis in Egyptian children. Therefore, it is important to introduce RV vaccine into the national immunization program in Egypt free of charge to all infants to reduce the burden of RV gastroenteritis.