Promoter shutoff of essential genes in the diploid
Candida albicans
has often been insufficient to create tight, conditional null alleles due to leaky expression and has been a stumbling block in pathogenesis research. Moreover, homozygous deletion of non-essential genes has often been problematic due to the frequent aneuploidy in the mutant strains. Rapid, conditional depletion of essential genes by the anchor-away strategy has been successfully employed in
Saccharomyces cerevisiae
and other model organisms. Here, rapamycin mediates the dimerization of human FK506-binding protein (FKBP12) and FKBP12-rapamycin-binding (FRB) domain-containing target protein, resulting in relocalization to altered sub-cellular locations. In this work, we used the ribosomal protein Rpl13 as the anchor and took two nuclear proteins as targets to construct a set of mutants in a proof-of-principle approach. We first constructed a rapamycin-resistant
C. albicans
strain by introducing a dominant mutation in the
CaTOR1
gene and a homozygous deletion of
RBP1
, the ortholog of
FKBP12
, a primary target of rapamycin. The
FKBP12
and the
FRB
coding sequences were then CUG codon-adapted for
C. albicans
by site-directed mutagenesis. Anchor-away strains expressing the essential
TBP1
gene or the non-essential
SPT8
gene as
FRB
fusions were constructed. We found that rapamycin caused rapid cessation of growth of the TBP-AA strain within 15 minutes and the SPT8-AA strain phenocopied the constitutive filamentous phenotype of the
spt8
Δ/
spt8
Δ mutant. Thus, the anchor-away toolbox for
C. albicans
developed here can be employed for genome-wide analysis to identify gene function in a rapid and reliable manner, further accelerating anti-fungal drug development in
C. albicans
.
IMPORTANCE
Molecular genetic studies thus far have identified ~27% open-reading frames as being essential for the vegetative growth of
Candida albicans
in rich medium out of a total 6,198 haploid set of open reading frames. However, a major limitation has been to construct rapid conditional alleles of essential
C. albicans
genes with near quantitative depletion of encoded proteins. Here, we have developed a toolbox for rapid and conditional depletion of genes that would aid studies of gene function of both essential and non-essential genes.