Pleurotus spp. are considered extremely rich mushroom species from the nutritional point of view, providing immune-enhancement effects when consumed. However, few mushrooms have been tested for their phenotypic and genotypic responses in animal models to ensure the proper dosage for their use. This study aimed to evaluate the effects of two mushroom species on the reproductive capacity of Drosophila melanogaster. Pleurotus citrinopileatus Singer and Lentinus sajor-caju (Fr.) Fr. were provided separately, in specific concentrations, as feed supplements to the fruit flies. The total numbers of developed larvae, pupae, and adults were then measured for each treatment. Inter simple sequence repeats marker analysis was carried out to infer genotypic changes in the mushroom-fed flies. Our results suggest that Pleurotus spp. can cause positive changes to the flies' reproductive capacity, since Pleurotus citrinopileatus in particular accelerated the life cycle and revealed a higher genetic dissimilarity of the diet-supplemented flies.