. Polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) analysis was used to characterize mitochondrial DNA (mtDNA) variation in screwworms, Cochliomyia hominivorax, and secondary screwworm, C. macellaria, from the Caribbean, North America and South America . Four amplicons, totaling 7 .1 kb, were analysed with sixteen restriction enzymes . A total of 133 restriction sites was observed in the two species, 104 in C. hominivorax, of which nineteen were variable, and ninetyfive in C. macellaria, none of which was variable . Fourteen mtDNA haplotypes were observed among eighteen C. hominivorax examined . Mean divergence between C . h o m i n i v o r a x h a p l o t y p e s ( d ) w a s 0 . 0 0 6 4 substitutions per base-pair and genotypic diversity (G) was 0 .97 . Mean divergence between C. hominivorax and C. macellaria was 0 .0824 . Cochliomyia hominivorax haplotypes could be divided into three assemblages representing North America, South America and Jamaica, based on UPGMA clustering with d values . The assemblages did not exhibit complete geographic fidelity . These data were discordant with previously published allozyme data indicating little differentiation between screwworm populations . A scenario invoking historically isolated populations coming into contact with the introduction and movement of European livestock is proposed to explain the observed population structure of screwworm.