B7-1 and B7-2 are members of the immunoglobulin superfamily (IgSF) and important regulators of T cell-mediated immune responses. Despite sharing only limited sequence identity, B7-1 and B7-2 bind common receptors, CD28 and CTLA-4, on T cells and have similar functional properties. We have found that the extracellular V(ariab1e)-like domains of B7-I and B7-2 share significant sequence similarities with 3 major histocompatibility complex (MHC)-encoded members of the IgSF: butyrophilin, myelin/oligodendrocyte glycoprotein, and the chicken MHC molecule, B-G. This raises the question whether there is an evolutionary link between the MHC, which encodes molecules regulating the antigen specificity of T lymphocyte responses, and B7 molecules, which co-stimulate these responses in antigen-nonspecific fashion.Keywords: B7; immunoglobulin superfamily; sequence similarity; structural similarity; T cell-mediated immunity Binding of CD28 and/or CTLA-4 receptors on T cells to B7 (CD80)-related molecules on antigen-presenting cells triggers a T cell co-stimulatory pathway required for optimal immune responses (Linsley & Ledbetter, 1993). Two B7-related molecules have been cloned from man and mouse: B7-I (Freeman et al., 1989, 1991) and B7-2 (Freeman et al., 1993a, 1993b) or B7-0 (Azuma et al., 1993. These molecules are members of the immunoglobulin superfamily (IgSF), comprising a V(ariab1e)-like and a C(onstant)-like domain in their extracellular regions. B7-1 and B7-2 share functional properties of binding to CTLA-4 and of co-stimulating T cell responses (see Linsley & Ledbetter, 1993, for review), despite having only -25% amino acid sequence identity in their extracellular domains.As part of ongoing efforts to elucidate the molecular basis of interactions between B7-related molecules and their receptors on T cells, we have analyzed the sequences of B7-related molecules relative to other members of the IgSF. We show that much of the sequence identity in the IgSF V-like domains of B7-1 and B7-2 beyond established IgSF consensus residues is shared with 3 other members of the IgSF, which are related: butyrophilin IgSF V-like domains were analyzed using the GCG package (Genetics Computer Corporation, Inc., Madison, Wisconsin, 1993). Two sequence comparison tables (Dayhoff et al., 1979;Risler et al., 1988) were used and gave similar results. Alignments were performed using PILEUP; position-specific sequence profiles were calculated using PROFILEMAKE and used to search the Swiss Protein Database with PROFILESEARCH. A profile calculated from the V-like domains of B7-1 and B7-2 showed higher sequence similarity with BT than with all other sequences in the Swiss Protein Database ( Z = 6.9; Z scores >5 are considered statistically significant). Another profile was calculated from B7-l, B7-2, and the V-like domain of BT, and again used for database searching. This profile revealed higher similarity with MOG ( Z = 12.4) than with all other sequences in the Swiss Protein Database; incorporation of MOG into the profile then ga...