The biological actions of interferons (IFNs) 1 require the activation of immediate early genes, which are mediated by the Stat family of transcription factors (1). Type 1 interferons (IFNâŁ/â€) binding to their cell surface receptors initiate a set of events that leads to tyrosine phosphorylation of Stat1 and Stat2. Tyrosine-phosphorylated Stat1 and Stat2 heterodimerize through their Src homology 2 domains and translocate to the nucleus where they bind to interferon regulatory factor 9 (IRF9) to form the transcription complex ISGF3. ISGF3 binds to an interferon-stimulated response element (ISRE) that is present in many IFNâŁ/â€-stimulated genes. Alternatively, tyrosine-phosphorylated Stat1 can form homodimers and bind to a â„ interferon activation sequence (GAS), an enhancer in the promoter of genes that do not require the participation of Stat2 or IRF9.Binding of ISGF3 to cellular genes containing ISREs is accompanied by changes in the chromatin structure of interferonstimulated genes (ISGs) (2). Cells incubated with IFN⣠show altered DNase I sensitivity surrounding the TATA box region as well as the ISRE of ISGs, suggesting that gene activation occurs as a result of chromatin remodeling (2). Consistent with this observation, both Stat1 and Stat2 have been shown to interact with the histone acetylases CBP/p300 and GCN5 resulting in increased association of the acetylated histone H3 with the promoter of the IFNâŁ/â€-stimulated gene ISG54 (3-6).From these observations one would predict that incubation of cells with HDAC inhibitors would increase IFN-activated gene expression, and this is indeed the case when one examines IFNâ„-stimulated expression of the MHC-II (7). However, in contrast to IFNâ„, interleukin-3-activated Stat5-dependent genes are inhibited in cells exposed to TSA (8), suggesting that in certain contexts HDAC activity may be required for Stat-dependent gene activation. Interestingly, other genes in which expression is activated by interleukin-3 in a Stat5-independent manner are unaffected by TSA. To examine the role of HDAC activity in the expression of genes regulated by Stat1 and Stat2, we have assayed for the expression of several RNAs in which genes are controlled by these transcription factors. To our surprise the actions of TSA on IFNâŁ/â€-stimulated gene expression were relatively selective. Whereas some IFNâŁ/â€-stimulated genes in which expression is regulated by an ISRE were strongly suppressed by TSA, others showed a more modest inhibition. Furthermore, genes in which activation required a GAS element, such as IRF-1, were not altered by TSA treatment. HDAC activity appears to be required to recruit RNA polymerase II (Pol II), but not Stat1 or Stat2, to the promoter of TSA-sensitive genes. The effects of TSA seem to be mediated either directly or indirectly by IRF9. Interestingly, if Pol II is already bound to the promoter and there is basal expression of the gene in the absence of IFNâŁ/†(i.e. IRF-1), then the suppressive actions of TSA are not observed. These data suggest a novel function for IRF9 ...