This is the first study to comprehensively report the presence, distribution of serotypes and virulence genes, antimicrobial susceptibility and DNA fingerprints of Klebsiella pneumoniae (KP) from intestinal tract of diarrhoea patients of China. Distribution of virulence genes, antimicrobial resistance spectrum, and relationship between virulence genes and antimicrobial resistance are clarified. It will be of great public health significance to estimate the prevalence of KP in faeces of diarrhoea patients, and to provide a theoretical foundation for the traceability, prevention and control, and reasonable treatment of infections caused by this bacterium.