“…Supervised hierarchical clustering analysis confirmed that a plethora of genes linked to the immune response were upregulated in both CR and AL mice upon MTB infection, but this upregulation was significantly more prominent in CR versus AL MTB-infected spleens, suggesting a CR-dependent increase of the immune-related splenic transcriptional response to MTB (Figures S4D and S4E). Examples of genes important for antimycobacterial host defense found upregulated in CR mice are colony-stimulating factor 1 (Csf1; Sariko et al, 2018); interleukin receptors (Il1rl1, Il2rb, Il12rb1, Il18r1, and Il23r) (Keegan et al, 2018;Zun ˜iga et al, 2012); surface markers of T cells and co-stimulatory molecules (Cd3, Cd4, and Cd28); T cell receptor-associated kinases (Zap70 and Lck); IFN-g and its receptor (Jasenosky et al, 2015);Thy1, Jack3, Stat members, and Spn (Sialophorin;Torres-Huerta et al, 2017); Zbp1 (Z-DNA-binding protein 1; Stutz et al, 2018); members of the guanylate-binding protein family (gbp 2,4,5,6,7,8,9,10,11;Tretina et al, 2019); and T cell-specific guanine nucleotide triphosphate-binding proteins (Tgtp1 and Tgtp2) (Figures 5D, S4D, and S4E; Table S2) (Rodrı ´guez-Contreras et al, 2002). During MTB infection, CR, compared to AL, also induced Irgm2 (immunity-related GTPase family M member 2), known to regulate autophagy in response to intracellular pathogens and already associated with susceptibility to MTB (Zhao et al, 2010); C-C motif chemokine receptor (Ccr5); C-X-C motif chemokine receptors (Cxcr3 and 6); and the associated C-X-C motif chemokine ligand 9 (Cxcl9) (Figures 5D, S4D, and S4E) (Domingo-Gonzalez et al, 2016).…”