The CA domain of the HIV-1 Gag polyprotein plays critical roles in both the early and late phases of viral replication and is therefore an attractive antiviral target. Compounds with antiviral activity were recently identified that bind to the N-terminal domain of CA (CA N ) and inhibit core assembly during viral maturation. We have determined the structure of the complex between CA N and the antiviral assembly inhibitor N-(3-chloro-4-methylphenyl)-N'-{2-[({5-[(dimethylamino)-methyl]-2-furyl}-methyl)-sulfanyl]ethyl}-urea) (CAP-1) using a combination of NMR spectroscopy and X-ray crystallography. The protein undergoes a remarkable conformational change upon CAP-1 binding, in which Phe32 is displaced from its buried position in the protein core to open a deep hydrophobic cavity that serves as the ligand binding site. The aromatic ring of CAP-1 inserts into the cavity, with the urea NH groups forming hydrogen bonds with the backbone oxygen of Val59 and the dimethylamino group interacting with the side chains of Glu28 and Glu29. Elements that could be exploited to improve binding affinity are apparent in the structure. The displacement of Phe32 by CAP-1 appears to be facilitated by a strained main chain conformation, which suggests a potential role for a Phe32 conformational switch during normal capsid assembly.The AIDS epidemic continues to be a significant international health problem, with approximately 40 million people living with HIV infection world-wide 1 . In 2006 alone, 4.3 million individuals became infected with HIV, and approximately 3 million deaths were attributed to AIDS. Therapeutic agents currently used to treat HIV infection target the viral reverse transcriptase, protease, and fusion proteins, and drugs that target the integrase enzyme are undergoing clinical trials (www.aidsinfo.nih.gov). Although sustained reductions in viral load can be achieved for many years with combination drug therapies 2; 3; 4 , inadequate suppression due to poor compliance, resistance, and interactions with other drugs or diet can be a significant problem for some patients and can lead to the spread of drug-resistant strains = These authors contributed equally to this work. * To whom correspondence should be addressed: W.I.S.: tel, 801-585-5402; e-mail, wes@biochem.utah.edu. M.F.S: tel 410-455-2880; e-mail summers@hhmi.umbc.edu. C.P.H: tel, 801-585-5536; e-mail, chris@biochem.utah.edu.Publisher's Disclaimer: This is a PDF file of an unedited manuscript that has been accepted for publication. As a service to our customers we are providing this early version of the manuscript. The manuscript will undergo copyediting, typesetting, and review of the resulting proof before it is published in its final citable form. Please note that during the production process errors may be discovered which could affect the content, and all legal disclaimers that apply to the journal pertain. The CA protein plays critical roles in the early and late phases of replication and has long been considered an attractive potential therapeuti...