The ecotropic Cas-Br-E murine leukemia virus (MuLV) and its molecularly cloned derivative pBR-NE-8 MuLV are capable of inducing hind-limb paralysis and leukemia after inoculation into susceptible mice. T, oligonucleotide fingerprinting, molecular hybridization, and restriction enzyme analysis previously showed that the env gene of Cas-Br-E MuLV diverged the most from that of other ecotropic MuLVs. To analyze proviruses in leukemic tissues, we derived DNA probes specific to Cas-Br-E sequences: two from the env region and one from the U3 long terminal repeat. With these probes, we found that this virus induced clonal (or oligoclonal) tumors and we documented the presence of typical mink cell focus-forming-type proviruses in leukemic tissues and the possible presence of other recombinant MuLV proviruses. Since the region harboring the determinant of paralysis was mapped within the pol-env region of the virus (L. DesGroseillers, M. Barrette, and P. Jolicoeur, J. Virol. 52:356-363, 1984), we performed the complete nucleotide sequence of this region covering the 3' end of the genome. We compared the deduced amino acid sequences of the pol carboxy-terminal domain and of the env gene products with those of other nonparalytogenic, ecotropic, and mink cell focus-forming MuLVs. This amino acid comparison revealed that this part of the pol gene product and the pl5E diverged very little from homologous proteins of other MuLVs. However, the Cas-Br-E gp7O sequence was found to be quite divergent from that of other MuLVs, and the amino acid changes were distributed all along the protein. Therefore, gp7O remains the best candidate for harboring the determinant of paralysis. The Cas-Br-E murine leukemia virus (MuLV) is an ecotropic retrovirus that was isolated from the brain of a paralyzed wild mouse (Mus musculus) trapped in Lake Casitas, Calif. (for a review, see references 16 and 17). It was shown to induce a progressive form of hind-limb paralysis and leukemia after inoculation into susceptible laboratory mice (16). Initial studies on the molecular structure of the Cas-Br-E MuLV genome revealed that its restriction map (5) and its T1 oligonucleotide fingerprinting pattern (29) were distinct from those of other ecotropic MuLVs isolated from inbred strains of mice. However, its genome appeared similar to the amphotropic MuLV genome except in the env gene, in which they diverged the most (1, 5, 29). Amphotropic MuLVs have also been isolated from wild mice, often from the same mice from which neurotropic MuLVs were isolated, and have been reported to be nonparalytogenic and weakly leukemogenic (16, 18, 36). In an effort to understand the molecular basis of the hind-limb paralysis, we first cloned the genome of Cas-Br-E MuLV and showed that this * Corresponding author. 9io that several determinants of leukemia seemed to be distributed along its genome (24). To monitor the fate of Cas-Br-E MuLV nucleic acids in infected tissues and to analyze its proviruses in infiltrated leukemic organs, we isolated probes which would not hybridize...