2019
DOI: 10.1038/s41598-019-49241-7
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Identification of stably expressed housekeeping miRNAs in endothelial cells and macrophages in an inflammatory setting

Abstract: Reliable quantification of miRNA expression by qRT-PCR crucially depends on validated housekeepers for data normalization. Here we present thoroughly tested miRNAs eligible as references in immunological studies utilizing endothelial cells and macrophages, respectively. Endothelial cells (cell line: TIME) and macrophages (cell line: RAW264.7) were treated with various pro- and anti-inflammatory mediators (cytokines, LPS, unsaturated fatty acids) given as either single substances or in combination. Isolated RNA… Show more

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Cited by 14 publications
(9 citation statements)
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“…Similarly, mir-30b had a near 3-fold increase (P < 0.05). However, the levels of mir-127 (98), mir-451, and mir-92a were stable between mock ECExos and R -ECExos ( Fig. 5c ).…”
Section: Resultsmentioning
confidence: 94%
“…Similarly, mir-30b had a near 3-fold increase (P < 0.05). However, the levels of mir-127 (98), mir-451, and mir-92a were stable between mock ECExos and R -ECExos ( Fig. 5c ).…”
Section: Resultsmentioning
confidence: 94%
“…For instance, a previous study suggested that miR-151a-5p could be involved in the regulation of cell respiration and ATP production in mitochondria via targeting cytochrome B ( 18 ). As a member of housekeeping miRNAs, miR-151a-5p was identified to be stably expressed in endothelial cells and macrophages in an inflammatory setting ( 19 ). Furthermore, Guo et al ( 20 ) showed that miR-151a-5p was upregulated in lung cancer, while miR-151a-5p silencing could inhibit the proliferation, invasion and migration, and induce the apoptosis of A549 lung cancer cells.…”
Section: Introductionmentioning
confidence: 99%
“…The ddPCR allows an absolute quantification of individual nucleotide molecules leading to an excellent quality and comparability of data. We could already confirm the validity of this method in an earlier publication on quantification of nucleic acids under septic conditions [45]. Accordingly, we considered it particularly appropriate for the objectives of this study.…”
Section: Discussionmentioning
confidence: 71%
“…miRNA expression was analyzed by next generation sequencing (NGS) in the Core Unit DNA, Medical Faculty, Leipzig University by means of an Illumina HiScan sequencer (Illumina Inc., San Diego, CA, USA) as previously described [45]. Samples were processed using the TruSeq Small RNA Prep kit v2 (Illumina Inc., San Diego, CA, USA) following the manufacturer's standard protocol.…”
Section: Deep Sequencing and Analysis Of Deep Sequencing Datamentioning
confidence: 99%