Recently we have explored the use of knockout/congenic mouse strains for isolating and mapping quantitative trait loci (QTLs). Because most knockout strains have been bred to be B6.129 congenic strains, they can be used to test for QTLs in the targeted chromosomal area as long as there is a genetic difference between B6 and 129. Thus, we have tested a number of knockout/congenic strains in a series of behavioral tests in which mouse performance has a significant genetic component. We have also developed a breeding scheme for distinguishing the effects of background flanking genes from the targeted ablation. In screening several knockout/congenics, we have found at least one that harbors a behavioral QTL in the 129 chromosomal segment. The position of this QTL was confirmed subsequently by several F1 crosses.Mice with ablations of single genes have been extremely useful in analyzing gene function. They have revolutionized our ability to test new hypotheses about the nature of human diseases, especially ones that are caused by genetic mutations. However, because of the way that these strains are generally derived, they also can be used to map complex traits. In essence, many established knockout mice are also congenic strains that have retained a short piece of 129 genetic material surrounding the target ablated locus. Commonly, when knockout mice are made, embryonic stem cells derived from the 129 strain of mice are used. Once these stem cells become germline, the mice are routinely backcrossed to the B6 strain for a number of generations (usually 6-10). This backcrossing scheme yields a congenic strain in which most background genes are derived from B6 but the chromosomal segment flanking the target gene remains of 129 origin. There are >50 of these knockout/congenic strains commercially available. Thus, these knockout/congenic strains represent a potential resource for mapping genes surrounding the target (or knocked out) locus. To investigate this resource, we have used these strains to map genes affecting certain behaviors, including open field activity. We selected open field activity as it has successfully been used as a measure of exploratory behavior and emotionality in mice (Flint et al. 1995;Koyer et al. 2000). The positions of any potential QTLs were then confirmed by additional crosses.
RESULTSWe have tested a number of knockout/congenic mouse strains in hopes of detecting background flanking 129 genes that affect behavioral characteristics. In past studies, we have found that the 129S1/SvImJ (129) strain performs differently from C57BL/6J (B6) on a variety of behavioral tests (Bolivar et al. 2000a;Cook et al. 2001; Bolivar et al., in press). Others have found differences between 129 and B6 strains as well (Logue et al. 1997;Owen et al. 1997b;Balogh et al. 1999;Paulus et al. 1999;Tarantino et al. 2000). This evidence supports our search for 129-derived chromosomal regions that may influence behavioral phenotypes. Although the 129 source of embryonic stem cells in many of the knockouts may be from a di...