Identification of a histidine-tyrosine cross-link in the active site of the
 cbb
 3
 -type cytochrome
 c
 oxidase from
 Rhodobacter sphaeroides

102

185

The heme-copper oxygen reductases are redox-driven proton pumps that generate a proton motive force in both prokaryotes and mitochondria. These enzymes have been divided into 3 evolutionarily related groups: the A-, B-and C-families. Most experimental work on proton-pumping mechanisms has been performed with members of the A-family. These enzymes require 2 proton input pathways (D-and K-channels) to transfer protons used for oxygen reduction chemistry and for proton pumping, with the D-channel transporting all pumped protons. In this work we use site-directed mutagenesis to demonstrate that the ba 3 oxygen reductase from Thermus thermophilus, a representative of the B-family, does not contain a D-channel. Rather, it utilizes only 1 proton input channel, analogous to that of the A-family K-channel, and it delivers protons to the active site for both O 2 chemistry and proton pumping. Comparison of available subunit I sequences reveals that the only structural elements conserved within the oxygen reductase families that could perform these functions are active-site components, namely the covalently linked histidinetyrosine, the Cu B and its ligands, and the active-site heme and its ligands. Therefore, our data suggest that all oxygen reductases perform the same chemical reactions for oxygen reduction and comprise the essential elements of the proton-pumping mechanism (e.g., the proton-loading and kinetic-gating sites). These sites, however, cannot be located within the D-channel. These results along with structural considerations point to the A-propionate region of the active-site heme and surrounding water molecules as the proton-loading site.cytochrome c oxidase ͉ respiratory enzymes

Section: Discussionmentioning

confidence: 81%

The cytochrome ba ₃ oxygen reductase from Thermus thermophilus uses a single input channel for proton delivery to the active site and for proton pumping

Chang¹,

Hemp

Chen

et al. 2009

102

185

“…The cbb 3 -type enzymes are found only in bacteria, and are both structurally and functionally the most distant from their mitochondrial counterparts. The mechanistic H + /e − stoichiometry of proton translocation in these cbb 3 -type cytochrome c oxidases has remained controversial. A stoichiometric efficiency of only one-half that of the mitochondrial aa 3 -type enzyme was recently proposed to be related to adaptation of the organism to microaerobic environments.…”

mentioning

confidence: 99%

“…Cytochrome cbb 3 belongs to the superfamily of respiratory hemecopper oxidases that couple the reduction of molecular oxygen to proton translocation across the bacterial or mitochondrial membrane. The cbb 3 -type enzymes are found only in bacteria, and are both structurally and functionally the most distant from their mitochondrial counterparts.…”

mentioning

confidence: 99%

Mechanistic stoichiometry of proton translocation by cytochrome cbb ₃

Rauhamäki

Bloch²,

Wikström³

2012

Self Cite

Cytochrome cbb 3 belongs to the superfamily of respiratory hemecopper oxidases that couple the reduction of molecular oxygen to proton translocation across the bacterial or mitochondrial membrane. The cbb 3 -type enzymes are found only in bacteria, and are both structurally and functionally the most distant from their mitochondrial counterparts. The mechanistic H + /e − stoichiometry of proton translocation in these cbb 3 -type cytochrome c oxidases has remained controversial. A stoichiometric efficiency of only one-half that of the mitochondrial aa 3 -type enzyme was recently proposed to be related to adaptation of the organism to microaerobic environments. Here, proton translocation by the Rhodobacter sphaeroides enzyme was studied using purified cytochrome cbb 3 reconstituted into liposomes. An H + /e − stoichiometry of proton translocation close to unity was observed using the oxygen pulse method, but solely in conditions in which the vast majority of the enzyme was fully reduced in the anaerobic state before the O 2 pulse. These data were compared with results using whole cells or spheroplasts, and the discrepancies in the literature data were discussed. Our results suggest that a proton-pumping efficiency of 1 H + /e − may be achieved using the single-proton uptake pathway identified in the structure of cytochrome cbb 3 . The mechanism of proton pumping thus differs from that of the aa 3 -type oxidases of mitochondria and bacteria.cell respiration | proton pumping

“…which is cross-linked to one of the histidine ligands to Cu B (21) and is approximately 4 Å from the O 2 binding site (16).…”

mentioning

confidence: 99%

Entrance of the proton pathway in cbb ₃ -type heme-copper oxidases

Lee

Gennis²,

Ädelroth

2011

Heme-copper oxidases (HCuOs) are the last components of the respiratory chain in mitochondria and many bacteria. They catalyze O 2 reduction and couple it to the maintenance of a proton-motive force across the membrane in which they are embedded. In the mitochondrial-like, A family of HCuOs, there are two well established proton transfer pathways leading from the cytosol to the active site, the D and the K pathways. In the C family (cbb 3 ) HCuOs, recent work indicated the use of only one pathway, analogous to the K pathway. In this work, we have studied the functional importance of the suggested entry point of this pathway, the Glu-25 (Rhodobacter sphaeroides cbb 3 numbering) in the accessory subunit CcoP (E25 P ). We show that catalytic turnover is severely slowed in variants lacking the protonatable Glu-25. Furthermore, proton uptake from solution during oxidation of the fully reduced cbb 3 by O 2 is specifically and severely impaired when Glu-25 was exchanged for Ala or Gln, with rate constants 100-500 times slower than in wild type. Thus, our results support the role of E25 P as the entry point to the proton pathway in cbb 3 and that this pathway is the main proton pathway. This is in contrast to the A-type HCuOs, where the D (and not the K) pathway is used during O 2 reduction. The cbb 3 is in addition to O 2 reduction capable of NO reduction, an activity that was largely retained in the E25 P variants, consistent with a scenario where NO reduction in cbb 3 uses protons from the periplasmic side of the membrane.glutamate | nitric oxide | oxygen reduction