Activation of the innate immune response by bacteria is mediated by a group of molecules that have collectively been termed modulins (1). This family of molecules includes a wide variety of substances including lipopolysaccharide (LPS) 1 from Gram-negative bacteria, lipoteichoic acid from Gram-positive bacteria, several different viral envelope glycoproteins, and flagellins from Gram-negative bacteria. Monocytes, macrophages, neutrophils, and epithelial cells respond to modulins by producing proinflammatory mediators such as tumor necrosis factor ␣, interleukin-1, and nitric oxide. Many bacterial modulins signal via toll-like receptors (TLR), a family of cell surface molecules that possess a leucine-rich extracellular domain and a cytoplasmic toll/interleukin-1 receptor homology domain (2).Although substantial progress has been made in our understanding of the intracellular pathways involved in TLR signaling, we have very little knowledge of the factors that determine the specificity of individual TLRs. For example, the common structural features that allow a diverse group of agonists such as LPS (3-5), heat shock protein 60 (6), respiratory syncytial virus F protein (7), and Escherichia coli P fimbriae (8) to signal via TLR4 are not readily apparent. Although investigators have accepted the notion that TLRs recognize pathogen-associated molecular patterns (9), we have a limited understanding of the structural elements within TLRs that determine their selectivity for specific agonists. The interaction of LPS with CD14 and TLR4 has been the most extensively studied system. LPS binding to CD14 appears to be required for the subsequent interaction of LPS with TLR4 (10) and MD-2, a TLR4-associated protein that may facilitate or enhance the cell surface expression of TLR4 (11). Difference in LPS structure may influence the quality of these interactions (12). Although the region of TLR4 that is involved in the recognition of LPS has not been defined, the structural features of CD14 that are involved in the recognition of LPS have been well characterized (13-16). In a recent study, it was suggested that peptidoglycan from Staphylococcus aureus can bind directly to the extracellular domain of TLR2 (17). However, soluble CD14 was found to enhance this interaction, leaving open the possibility that CD14 or similar proteins might be mediators of the interaction between peptidoglycan and TLR2.Recent reports from our laboratory and others have demonstrated that flagellins from Gram-negative bacteria activate a range of inflammatory cells via a TLR5-dependent signaling pathway (18 -20). As with other TLRs, flagellin signaling via TLR5 involves the activation of the interleukin-1 receptorassociated kinase (20,21). Although the TLR5 dependence of Gram-negative flagellin signaling has been well documented, the structural requirements for the interaction between flagellin and TLR5 are only partially understood. Structure/function studies with soluble flagellin indicate that the amino and carboxyl constant regions are most critic...