The human pathogen Burkholderia pseudomallei possesses multiple type III secretion system (T3SS) gene clusters. One of these, the B. pseudomallei T3SS2 (T3SS2 bp ) gene cluster, which apparently plays no role in animal virulence, is also found in six additional Burkholderia spp. and is very similar to T3SSs found in phytopathogenic Xanthomonas spp. and Ralstonia solanacearum. The T3SS2 bp gene cluster also encodes an AraC-type regulatory protein (HrpB bp ) that is an ortholog of HrpB, the master regulator of the R. solanacearum T3SS (T3SS rso ) and its secreted effectors. Transcriptome analysis showed that HrpB bp activates the expression of T3SS2 bp genes, as well as their orthologs in R. solanacearum. In addition to activating T3SS2 bp , HrpB bp also upregulates the expression of ϳ30 additional B. pseudomallei genes, including some that may confer production of adhesive pili, a polyketide toxin, several putative T3SS2 bp -secreted effectors, and components of a regulatory cascade. T3SS2 bp promoter regions were found to contain a conserved DNA motif (p2 bp box) identical in sequence and position to the hrp II box required for HrpB-dependent T3SS rso transcription activation. The p2 bp box is also present in the promoter regions of the essentially identical T3SS found in the very closely related species Burkholderia thailandensis (T3SS2 bt ). Analysis of p2 bp box mutants showed that it is essential for HrpB bp -mediated transcription activation in both species. Although it has been suggested that T3SS2 bp and T3SS2 bt may function in phytopathogenicity, we were unable to demonstrate a phytopathogenic phenotype for B. thailandensis in three different plant hosts.