The spring-fed Comal River in Texas, USA, has been impounded and channelized resulting mainly in a lentic environment with four headwater spring runs. We sampled two spring runs (lotic sites) and two lentic sites seasonally from April 2001 through April 2002 to assess (1) co-occurrence of native and exotic snail species (as determined by interspecific association), (2) the importance of habitat conditions in structuring relationships among these species, and (3) the distribution of snails infected with exotic trematode parasites. Three exotic and four endemic species of aquatic snails were collected, but only Elimia comalensis (Prosobranchia: Pleuroceridae, native), Melanoides tuberculatus, and Tarebia granifera (Prosobranchia: Thiaridae, exotic) were in sufficient densities for further analyses.Tarebia granifera was positively associated with both M. tuberculatus (v 2 = 18.5, P \ 0.001) and E. comalensis (v 2 = 7.3, P \ 0.01), although the cooccurrence between the two exotics was much stronger. Melanoides tuberculatus and E. comalensis exhibited a strong, negative association (v 2 = 10.9, P \ 0.001). The weaker co-occurrence between E. comalensis with the thiarids appeared to be driven by differences in habitat use by the thiarids and native E. comalensis. In lentic habitats, densities of M. tuberculatus and T. granifera were similar but differed significantly from E. comalensis whose densities were 200 times less than the exotic snails. In lotic spring runs, densities of T. granifera and E. comalensis were similar, but differed significantly from M. tuberculatus whose densities were 10 times fewer. Lower densities of M. tuberculatus and T. granifera in habitat conditions common to the spring runs may explain why exotic snail interactions were less with the native E. comalensis than with each other. The native snail, E. comalensis, was not infected with any trematodes, while 6.1% of M. tuberculatus and 4.8% of T. granifera were infected with exotic trematodes. Distributions of infected snails were aggregated; such that most infected snails were found in lentic habitats with silt substrates and moderate to high levels of detritus. Continued declines in spring-flows due to aquifer withdrawals and droughts will increase lentic habitats that may lead to increased densities of T. granifera and M. tuberculatus and their concomitant parasites.