Abstract:The integration of immunoassays in microfluidic devices is a rapidly developing research area combining the power of immunoassays with the inherent benefits of microfluidics. Here, a general overview of microfluidic-based immunoassays is presented along with a method for immobilizing antibodies in polyacrylamide gel plugs set in microfluidic channels. These antigen-specific hydrogels can be rapidly formed by photopolymerizing monomer solutions mixed with antibodies or other large proteins. The resulting antige… Show more
“…Porous membranes provide a convenient support material, which is strong and for which a variety of materials and protocols are available. Hydrogels cannot compete with membranes in terms of strength and durability, but they provide the best 3D support for the immobilisation of test molecules (whether proteins or peptides) in their native functional state in highly porous hydrogel substrate suitable for both functional assays (36) and immunoassays (26,37,38). When hydrated, the hydrogels swell, allowing easy access for the molecules and short diffusion times, but when dried, the gel thickness is reduced significantly, resulting in focussing of the trapped fluorescence in a thinner layer.…”
Section: Peptide Assays On Hydrogelsmentioning
confidence: 99%
“…Do not remove the probe from the beaker far in advance of surgery to prevent drying out of the membrane (it will become unusable). 38. The probe is still attached to the syringe through the inlet tubing, so the pump should be close enough that it can be connected to the crab without straining the tubing.…”
mentioning
confidence: 99%
“…Further increases are counterproductive as the procedure becomes very long and sample evaporation becomes an issue. 38. High humidity should be maintained inside the robot whilst spotting, especially for longer runs.…”
With the entire genome sequence of several animals now available, it is becoming possible to identify in silico all putative peptides and their precursors in an organism. In this chapter we describe a searching algorithm that can be used to scan the genome for predicted proteins with the structural hallmarks of (neuro)peptide precursors. We also describe how to use search strings such as the presence of a glycine residue as a putative amidation site, dibasic cleavage sites, the presence of a signal peptide, and specific peptide motifs to improve a standard BLAST search and make it suitable for searching (neuro)peptides in EST data. We briefly explain how bioinformatic tools and in silico predicted peptide precursor sequences can aid experimental peptide identification with mass spectrometry.
“…Porous membranes provide a convenient support material, which is strong and for which a variety of materials and protocols are available. Hydrogels cannot compete with membranes in terms of strength and durability, but they provide the best 3D support for the immobilisation of test molecules (whether proteins or peptides) in their native functional state in highly porous hydrogel substrate suitable for both functional assays (36) and immunoassays (26,37,38). When hydrated, the hydrogels swell, allowing easy access for the molecules and short diffusion times, but when dried, the gel thickness is reduced significantly, resulting in focussing of the trapped fluorescence in a thinner layer.…”
Section: Peptide Assays On Hydrogelsmentioning
confidence: 99%
“…Do not remove the probe from the beaker far in advance of surgery to prevent drying out of the membrane (it will become unusable). 38. The probe is still attached to the syringe through the inlet tubing, so the pump should be close enough that it can be connected to the crab without straining the tubing.…”
mentioning
confidence: 99%
“…Further increases are counterproductive as the procedure becomes very long and sample evaporation becomes an issue. 38. High humidity should be maintained inside the robot whilst spotting, especially for longer runs.…”
With the entire genome sequence of several animals now available, it is becoming possible to identify in silico all putative peptides and their precursors in an organism. In this chapter we describe a searching algorithm that can be used to scan the genome for predicted proteins with the structural hallmarks of (neuro)peptide precursors. We also describe how to use search strings such as the presence of a glycine residue as a putative amidation site, dibasic cleavage sites, the presence of a signal peptide, and specific peptide motifs to improve a standard BLAST search and make it suitable for searching (neuro)peptides in EST data. We briefly explain how bioinformatic tools and in silico predicted peptide precursor sequences can aid experimental peptide identification with mass spectrometry.
Endocrine tissues like the pituitary, hypothalamus and islets of Langerhans are rich in bioactive peptides. These are used for intercellular signalling and are involved in regulation of almost all physiological processes. Peptidomics is the comprehensive analysis of peptides in tissues, fluids and cells. Peptidomics applied to (neuro-)endocrine tissues aims therefore to identify as many bioactive peptides as possible. Peptidomics of (neuro-)endocrine tissues requires an integrated approach that consists of careful sample handling, peptide separation techniques, mass spectrometry and bioinformatics. Here we describe the methods for isolation and dissection of endocrine tissues, the extraction of bioactive peptides and further sample handling and identification of peptides by mass spectrometry and hyphenated techniques. We also present a straightforward method for the comparison of relative levels of bioactive peptides in these endocrine tissues under varying physiological conditions. The latter helps to elucidate functions of the bioactive peptides.
We present a simple system for CD4 and CD8 counting for point-of-care HIV staging in low-resource settings. Automatic sample preparation is achieved through a dried reagent coating inside a thin (26 μm) counting chamber, allowing the delayed release of fluorochrome conjugated monoclonal antibodies after the filling of the chamber with whole blood by capillary flow. A custom-built image cytometer is used to capture fluorescence images representing more than 1 μl of blood. The thin layer of blood in combination with the large image area allows the use of whole blood from a finger prick without the need for dilution, lysis or cell enrichment. Automatic cell counting of CD4(+) and CD8(+) T-lymphocytes correlates well with results obtained by flow cytometry.
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