Background: Little information exists on the vertical and horizontal movements of juvenile scalloped hammerhead sharks (Sphyrna lewini). Measurements of the sizes of juveniles caught in nets close to shore and those swimming in schools at seamounts and islands in the southwestern Gulf of California, Mexico indicate that at least part of the population undergoes a migration during their life cycle at a length of approximately 115 cm total length (TL) from coastal to offshore waters. Three juvenile hammerhead sharks were outfitted with archival tags in Mazatlan and La Paz Bay (LPB), Mexico during February 2006 and January 2007, respectively. Results: A single juvenile female measuring 95 cm TL tagged in LPB was recaptured. It traveled a distance of approximately 3,350 km during a 10.5-month period from LPB northward to the central Gulf of California and returning to LPB, 11.7 km north of the location it was tagged. During this migration, the hammerhead increasingly moved from shallow coastal waters to deeper waters to possibly maximize its foraging success. After moving offshore, the shark remained in shallow and warm waters of less than 30 m depth and as high as 32°C during the day, and made repeated dives to deeper and colder waters of 250 m depth and 11°C, at night.