Purpose Recent studies have proposed central serotonergic dysfunction as a major pathophysiology of migraine. We investigated serotonin transporter (SERT) availability in migrai neurs using F-18-N-(3-fluoropropyl)-2β -carbomethoxy-3β-(4-iodophenyl) nortropane ( Results BP ND at the brainstem was significantly higher in adult migraineurs (n=6, 1.15±0.17) than healthy subjects (0.95 ± 0.14) (p = 0.04). Healthy subjects demonstrated negative correlation between brainstem BP ND and age (r= −0.64, p=0.02), whereas this age-related decline pattern was not found in the migraineurs. Severity of migraine attack was significantly correlated with brainstem BP ND (r=0.66, p= 0.02), when age and duration of illness were corrected. Conclusions Increased SERT availability in the brainstem of adult migraineurs indicates low serotonin neurotransmission during headache-free phase. Patients who experience more painful headaches have lower serotonin neurotransmission.[ 18 F]FP-CIT PET is a useful in vivo imaging technique for evaluating brainstem SERT availability in migraineurs.